Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0231 ATGACAATGGGGGAAGACTCTTTAGCACCACTTACATTTGACAGAACTGCTGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTTAAATGTGGTCGCCGAGGAAAGCCGAAGCTCTGCCCGTTCAGACTTTCTCCGGATGAAAGGAATTTGATATGGTACTCCGGGCAGGACGAAAAGCATTTGCGATTGAGTGCAGTTACTGAAATTATTCAAAGGCAGGGAAATATAAGGTCGCATGGGCATGAGGAACCTGGAAAGGATGATCTTTCATTTTCACTAATCTATGCTAATGGTGGACGATCTCTTGATCTGATATGCAAGGACAAAGCACAGGCTGCTTTGTGGTTTGTTGGCTTGAAAGCCGTGATTCCTACGTGCGAGCATCCTAGGCCGTTTAGCGGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTTAGTAGTCCAGCTGGAATCTTCCGAAGAAAGAAAAATCTTGGCCTTCTGGATGAATCTTCTCAACTAACACAGGTACATAGCGTATGTGCAAGTCCTACTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGTTTATCATATACATCTGAAAACGTTTATTCCAGAACTCAAGGAGTAATAGATAATTCAGTCCCAAGTTCGTCATATATAGATGCTGGTATTCTCAGTAAGGTTGAACCACTGCATCTTGACAGGGAGTACAAGAAAATTTTGTCCTATAGGTCTCTGATGCCTCCTGCCTCCCCGCGTATGCGAAATAGCGATGTATTAAGGGATGTGATGGTATGGGGTGGAGGTATTGGAGGTCGTTTAGGGATTGTGAATGAAAGGTTTGTCAATCAGCATGGGATTTATTCTTTAGTGCCGAAGTTACTCGAATCCACTATGATGTTAGATGTACAAAATATAGCTCTAGGAAGTAACCATGCTGCCTTGGTTACAAAACAAGGTGAAGTTTTTTGCTGGGGTCAAGGGAAGTGGGGAAGGCTGGGGCAAAAAATTGATATAGACATTTGCTCTCCGAAACTAGTTGATTCTCTGAACGGTATGCATGTAAAACATGTTGCCTGTGGCGAGTATCATACATGTGCTTTGACAGATTCCGGTGAAGTATATACGTGGGGGAATGATGCTTGTAACGCAGATTCGGGTGATGAATGGAGAACTAAAAGTCAGTGGATACCCCATAAACTTTCTGGTCCTTTAGATGGTATTAGTATTTCAAGTATTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTAGCTGTGGGCGGTTATTTACATACGGAGAAGGTACATTTGGAGTTCTTGGCCATGGCAATCTTAGGAGCTTTTCTCAGCCTAAAGAAGTCGAGTCTCTAAGTGGTGTAAGGGTGAAGTCTGTTGCTTGTGGATCATGGCATACAGTAGCTATTGTTGAAGTCATTGCTGACCGTTTTAGGTATAATACTGCAAGTGGTAAACTGTTTACATGGGGTGATGGAGATTATGGGAGGCTCGGTCACGCTGATAATGGAAGAAAGCTTATACCAACATGTGCTTCACAACTTGTTGACTATGATTTTGTTCAAGTGTCTTGTGGAAGAATGTTTACTGTTGCACTTACTACTATGGGCAAAGTTTTTGCAATGGGAAGTACAAAATACGGACAGCTGGGAAATCCACATGCTAGGGACAAAGCAATTATGGTTGAAGGACTGCTTAAACAGGAGTTTGTTAAAGTGATATCATGCGGTTCATATCATGTTTCTGTTTTGACTTCTGCCGGGAGTGTCTATACATGGGGCAAGGGTCAAAATGGTCAACTCGGGCTAGGCGATACCGAAGACAGGAATACACCTTCTTTTGTTGAAACTCTAAGAGACAGGCATGTAGATACAATAACTTGTGGCCCAAGCTTCACAGCTGCAATCTGTTTACACAAACCTATTTCTATCAGTGATCAGTCAGCTTGTAGTGGTTGTCGGTTGCCGTTTGGGTTCACAAGGAAGAAGCATAACTGTTACAATTGTGGACTTCTGTTTTGCCATGCTTGTAGTAGTAAAAAGGCTATAAATGCATCTCTAGCCCCAAGTAACAGCAAGGCTTTCCGGGTTTGTGATCAGTGCTTCGATAAACAACAAGGAAGTGCTTATTCTGGAATGGCATCAAAGTCCAGAAGTCATAACACTCAGCAGGTGCTGAAGCATCAAAACAAAATTCCCTATCTGACTGAGGATAGGGGAGAAACAACCGTGACGCAGGGTCCATTGTTATCTCTCAGTCAATCATGTTACAGGAAAAGCATGCCGAGTGGACGGAAGGACTGGAAAAACCAACAAGAAAGCCAGCAGCACTTGGAAGATAGTTCTTCGACATTTAATGGAGTGTCACGATGGGGGCAGGTTCCATGTCCGGACTTATTCAACGTCAATTGTGCAAAAAATTCAGCTATGCATGTTTCTTCATGGAAACATAAATCAGCTACTGTTTCACCATTGAATATAGAATCTGCAGTATGCAACCTCCCTGTTGCTGAGACATATACAACAAAGTCTGATAAGATGCTCATAGAAGAAGTTCAGAGGCTGAGAACTGAGGCTAGGAGACTTGAAGAGAAATGTGAGCTCAAAAACCAAAAAATACAAGAGTATCAACAAAAAGTTGAGGAGAGCTGGCTTGTGGCTAAGGAGGAAGCTGCCCAGAGCAAGGCAGCAAAAGAGGTCATAAAAGCTTTAGCATTAAGGCTTCATACATTGTCAGAAAAAGACAATGGTGTACAAGAAGAAAGAGTTATACATGAATGTCCACCTACTTTGGCACACATACAAACAGATATCAAGAGTCCAAAAGTTGGCAACATTGACAGTCTATCTAATTCCCCTATAGTATTTTCTGATACATTAAAATCCAAATTTGAGAGAAACATGCTCCTAAAAAATGATAAATTATCGGAGAACTCTAACTTCAATAGCGCAGAACCACAAGAAAGCAGCGCCGACGGCTTGAAGGCTGAATGGGTAGAACAGTATGAGCCTGGTGTTTACATCACATTAACAACCTTATCAAGTCGGAGAAAAGGTCTTAAGCGAGTGAGATTTAGCCGGAAACGATTCTCGGAGAAGGAAGCTGAAAGATGGTGGGAAGAGAATCAAGCTACAGTATACCATAAGTATGATATTGAAAGATATACAAACACTAGACAAATTCAGCTGAAAGGCTGA 3207 0.4206 MTMGEDSLAPLTFDRTAEQAIVSIKKGAYLLKCGRRGKPKLCPFRLSPDERNLIWYSGQDEKHLRLSAVTEIIQRQGNIRSHGHEEPGKDDLSFSLIYANGGRSLDLICKDKAQAALWFVGLKAVIPTCEHPRPFSGLRSCKGVQSCVSSPAGIFRRKKNLGLLDESSQLTQVHSVCASPTLSLSERCFSDGLSYTSENVYSRTQGVIDNSVPSSSYIDAGILSKVEPLHLDREYKKILSYRSLMPPASPRMRNSDVLRDVMVWGGGIGGRLGIVNERFVNQHGIYSLVPKLLESTMMLDVQNIALGSNHAALVTKQGEVFCWGQGKWGRLGQKIDIDICSPKLVDSLNGMHVKHVACGEYHTCALTDSGEVYTWGNDACNADSGDEWRTKSQWIPHKLSGPLDGISISSIACGEWHTAIVSSCGRLFTYGEGTFGVLGHGNLRSFSQPKEVESLSGVRVKSVACGSWHTVAIVEVIADRFRYNTASGKLFTWGDGDYGRLGHADNGRKLIPTCASQLVDYDFVQVSCGRMFTVALTTMGKVFAMGSTKYGQLGNPHARDKAIMVEGLLKQEFVKVISCGSYHVSVLTSAGSVYTWGKGQNGQLGLGDTEDRNTPSFVETLRDRHVDTITCGPSFTAAICLHKPISISDQSACSGCRLPFGFTRKKHNCYNCGLLFCHACSSKKAINASLAPSNSKAFRVCDQCFDKQQGSAYSGMASKSRSHNTQQVLKHQNKIPYLTEDRGETTVTQGPLLSLSQSCYRKSMPSGRKDWKNQQESQQHLEDSSSTFNGVSRWGQVPCPDLFNVNCAKNSAMHVSSWKHKSATVSPLNIESAVCNLPVAETYTTKSDKMLIEEVQRLRTEARRLEEKCELKNQKIQEYQQKVEESWLVAKEEAAQSKAAKEVIKALALRLHTLSEKDNGVQEERVIHECPPTLAHIQTDIKSPKVGNIDSLSNSPIVFSDTLKSKFERNMLLKNDKLSENSNFNSAEPQESSADGLKAEWVEQYEPGVYITLTTLSSRRKGLKRVRFSRKRFSEKEAERWWEENQATVYHKYDIERYTNTRQIQLKG* 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0231 1068 Gene3D - 386 478 IPR009091 -
Lan4g0231 1068 Gene3D - 253 385 IPR009091 -
Lan4g0231 1068 Gene3D - 479 647 IPR009091 -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 425 476 IPR000408 -
Lan4g0231 1068 SUPERFAMILY FYVE/PHD zinc finger 648 711 IPR011011 -
Lan4g0231 1068 Gene3D - 15 131 IPR011993 -
Lan4g0231 1068 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 718 IPR013083 -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 259 317 IPR000408 -
Lan4g0231 1068 CDD PH_PLC_plant-like 15 126 - -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 591 642 IPR000408 -
Lan4g0231 1068 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1053 IPR013591 -
Lan4g0231 1068 MobiDBLite consensus disorder prediction 764 787 - -
Lan4g0231 1068 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 1056 - -
Lan4g0231 1068 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 647 709 IPR017455 -
Lan4g0231 1068 ProSiteProfiles BRX domain profile. 999 1054 IPR013591 -
Lan4g0231 1068 SMART fyve_4 641 710 IPR000306 GO:0046872
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 260 276 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 320 336 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 370 386 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 411 427 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 427 441 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Lan4g0231 1068 PRINTS Chromosome condensation regulator RCC1 signature 586 607 IPR000408 -
Lan4g0231 1068 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 463 473 IPR000408 -
Lan4g0231 1068 Coils Coil 848 882 - -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 424 IPR000408 -
Lan4g0231 1068 SUPERFAMILY RCC1/BLIP-II 260 643 IPR009091 -
Lan4g0231 1068 Pfam FYVE zinc finger 649 707 IPR000306 GO:0046872
Lan4g0231 1068 SUPERFAMILY PH domain-like 16 126 - -
Lan4g0231 1068 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 590 IPR000408 -
Lan4g0231 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 318 366 IPR000408 -
Lan4g0231 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 369 420 IPR000408 -
Lan4g0231 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 487 536 IPR000408 -
Lan4g0231 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 425 473 IPR000408 -
Lan4g0231 1068 Pfam Regulator of chromosome condensation (RCC1) repeat 591 639 IPR000408 -
Lan4g0231 1068 PANTHER F12P19.9 PROTEIN 16 1056 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0231 Lan-Chr4 3782405 3789652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0231 995 1058 Major Intrinsic Protein MIP AT1G31880 45.312 2.31e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0231 - - adu:107481014 1644.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0231 4 3782405 3789652 Lan16g0592 16 7143723 7151289 LSH