Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0226 ATGGTTTTGTCCAAGACAACCTCCACCAGCGATCTCTCTGTCCACTCAACCTTTGCTTCACGCTATGTCCGAACCTCACTTCCCAGGTTCAAGATGGCACAAGAGTCTATACCAAAGGAAGCAGCATATCAAATTATAACGGATGAGCTTATGCTTGATGGGAACCCAAGGTTGAATCTTGCATCATTTGTAACAACATGGATGGAGCCAGAATGCAATAAGCTCATAATGGATTCTATTAACAAGAACTACGTTGATATGGATGAGTATCCTGTTACCACTGAGCTTCAGAATCGATGTGTTAACATGATAGCTCATCTTTTTAATGCACCACTTGAAGAATCTAAGACTGCAATTGGTGTTGGCACGGTTGGCTCATCAGAGGCCATAATGTTAGCTGGTTTGGCATTTAAAAGAAAGTGGCAAAACAGAAGAAAAGAAAAGGGAAAGCCTTATGACAAACCCAACATAGTCACTGGAGCCAATGTCCAGGTTTGCTGGGAGAAATTTGCAAAGTACTTTGAAGTGGAGTTGAAAGAGGTGAAGCTGAGTGATGGATACTATGTAATGGACCCTGAAAAAGCTGTGGAATTGGTGGATGAGAACACCATTTGTGTTGCTGCTATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATATCAAGCGCATAAATGATCTCCTAATTCAAAAGAATAAGGAAAATGGATGGGACACTCCTATTCATGTGGATGCAGCAAGTGGTGGCTTTATTGCCCCATTTATTTATCCAGAGCTTGAATGGGACTTTCGTTTACCACTAGTGAAGAGCATCAATGTTAGTGGCCACAAATATGGTCTAGTCTATGCTGGAATAGGTTGGGTTATTTGGAGAAACAAGGAGGACTTGCCTGAAGAACTTATCTTCCACATCAACTATCTTGGAGCTGATCAACCAACCTTCACCCTCAACTTTTCCAAAGGTTCTAGCCAAGTTATTGCTCAATATTACCAACTAATTCGCCTTGGTTATGAGGGATACAAAAATGTGATGGAAAATTGTAGAGACAACATGTTAGTACTGAGGGAGGGACTTGAGAAAACAGGGAGATTTGAAATAGTATCAAAAGAGGAAGGTATCCCTTTGGTGGCCTTCAGTTTGAAGGACAACAGCCACTTTGATGAATTCCAAATCTCTGACCTCCTCAGGCGCTTCGGGTGGATCGTGCCAGCATACACCATGCCACCAGATGCTCAACATGTGACTGTGCTTCGTGTTGTCATTAGAGAAGACTTCTCAAGAACCCTCGCTGAACGTCTCATGGTTGATATCGAGAAAGTGTTGCATGAACTTGATTCACTTCCTTCAAAGGTGGTGGCTAGCACCAGTGTAACAGTTCCAGAAAGTGTAAACAACAATGACAAAGTTAAGAACACTGATATTGAGATACAAAGGGAAATGACTGCCGTCTGGAATAGGTATTTGTTGGAGAGGAAGAAGCTAAATGACAAGATGAATGGTGTTTGTTAA 1509 0.4188 MVLSKTTSTSDLSVHSTFASRYVRTSLPRFKMAQESIPKEAAYQIITDELMLDGNPRLNLASFVTTWMEPECNKLIMDSINKNYVDMDEYPVTTELQNRCVNMIAHLFNAPLEESKTAIGVGTVGSSEAIMLAGLAFKRKWQNRRKEKGKPYDKPNIVTGANVQVCWEKFAKYFEVELKEVKLSDGYYVMDPEKAVELVDENTICVAAILGSTLNGEFEDIKRINDLLIQKNKENGWDTPIHVDAASGGFIAPFIYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCRDNMLVLREGLEKTGRFEIVSKEEGIPLVAFSLKDNSHFDEFQISDLLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRTLAERLMVDIEKVLHELDSLPSKVVASTSVTVPESVNNNDKVKNTDIEIQREMTAVWNRYLLERKKLNDKMNGVC* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0226 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 - -
Lan4g0226 502 Gene3D - 361 448 - -
Lan4g0226 502 Gene3D - 66 360 IPR015421 GO:0003824
Lan4g0226 502 SUPERFAMILY PLP-dependent transferases 15 444 IPR015424 -
Lan4g0226 502 Gene3D - 1 65 - -
Lan4g0226 502 PANTHER GLUTAMATE DECARBOXYLASE 1 502 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lan4g0226 502 CDD DOPA_deC_like 59 439 - -
Lan4g0226 502 Pfam Pyridoxal-dependent decarboxylase conserved domain 39 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lan4g0226 502 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 444 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0226 Lan-Chr4 3707073 3714879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0226 1 502 Calmodulin-binding Proteins AT5G17330 81.621 0.0 875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0226 4 3707073 3714879 Lan2g1073 2 21993853 21996910 LSH
Lan4g0226 4 3707073 3714879 Lan16g0594 16 7237503 7246921 LSH
Lan4g0226 4 3707073 3714879 Lan2g1073 2 21993853 21996910 PCT
Lan2g1073 2 21993853 21996910 Lan4g0226 4 3707073 3714879 PCT