Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0225 ATGTCACTACTTTCCTTCACATTCTTCCTCACTTTTTTCACCACCGTCACTGCCACTCAATTTGACTTTGACACATTAACATTAACCACTCTCAAGCTCATCGGAGACGCTCATCTCACTAAGAATAACACTCTCACCCTCACCGGCCACGCCACCGTCCCCTCCTCCGCCGCTGCTAGAGCGTTTTACTCCCAACCCGTCACTTTCCGGCAACCAGGCAACCCTTCTCCGGCGAGCTTCACCACCTTCTTCTCCTTCTCCGTTACCAACCTCAACCCTTCCTCCATCGGCGGCGGACTCGCCTTCCTCATATCCTCCGATGACAACACCCTCGGCGATCCCAACGGCGCCCTCGGACTTGCCGGCGCCGGCGACAATTTCTTCGCCGTGGAGTTCGACACTTTAATGGACGTGGGGTTCAACGACATCAACGGAAACCACGTTGGCATTGACGAAAACAGCGTCGTTTCAGATAAAGTTTCCGACTTGGGAACAATCGGAATCGATCTCAAGAGCGGTGACGCAATAAACGCCTGGGTCGAATTCAACGGAATAACGAAAGTGTTGCAAGTGTGGGTATCTTACTCCAACGTGAAACCAAAAGATCCGATTTTGAAAACGGATATTGATCTGGGTCGGATCCTAAATGAGATAATGTACGTGGGTTTTTCTGGGTCCACGCAAGGTAGCACAGAAGTTCACACTGTACAGTGGTGGAGTTTCACTTCCACCTTTGATTCTCTCTCTCCACCACCTCCAACGGTTACTACTTTCATGAACCCAACAACAACAACCGCCACGTCAGCACCACCGCCAGAGGAGAGTGATAAGTCCACGTGTCACAGTGGGCTTTGCAAGAAGGGTGTGGGAGCAGTAGTTGCTGGTGTTGTAACTGCTGCTGCTTTTGTTCTTGTTTTATTTGCTGGTGCTGTATTGATTTGGGTGAAGAAATTGAAACGTGTCAAGAGGTTTGAGTTTGTTTCAATTGGGTTTGGGTCAGAGGTTATAAAAATGCCAAAAGAGTTTAGCTTTAAAGAAATTAAATTGGCTACTAAGTGTTTCAGTGATAATAGGATTCTTGGTCATGGTGCGTTTGGGACTGTTTATAAGGGAATATTGAAAGAGAGTGGTGACATTGTTGCTGTGAAGAGGTGTAGCCATAGTGGTGATCAGGGTAAGAGTGGGTTTTTGTCTGAGTTGTCTATTATTGGGACTCTTAGGCATAGGAATCTTGTTCCACTTCAAGGTTGGTGCCATGAGAAAGGTGAAATTTTATTGGTGTATGAGTTTATGATAAATGGTAGTCTAGATAAGGCTTTGTATGAGGCTAGAATACCTTTACCATGGTGTCATAGGAGAAAAATTTTGTTAGGTGTGGCGTCTGTTTTGGCATACTTGCATCATGAGTGTGAGAATAAGGTGATTCATAGAGACATTAAGACTAGTAACATAATGCTAGACGAAGGGTTTAATGCTCGGTTGGGTGATTTTGGTTTGGCGAGGAAGATGGAGCATGACAAGTCACCGGATGCCACAGTGGCTGCGGGAACAATGGGGTACTTGGCACCGGAGTATGTCCTTACAGGTAGGGCCACTGAGAAAACCGATGTGTTCAGTTTCGGTGCTGTGGTCCTTGAAGTGGCATGTGGGAGAAGGCCTATAGAGAAAGATGTTTGCGGGGTTCATGGAGTTGGGGGTATTAGCAATTTGGTGGAATGGGTTTGGAGTTTGCACAATGAAGGGAATTTGCTAATGGTGGCAGATCCGAGGCTTGAGGGTGAGTTCGAGGAAGGGGAGATGAGGAAGGTACTCTTGGTTGGGCTAGCTTGCTCACACCCTGATTCAATGGCTAGACCTACAATGAGGAGTGTGGTTCAAATGCTGCTTGGTGAGGCTGAAGTGCCTATTGTCCCTAGAACCAAGCCATCTACTAGTTATAGTACTTCCCATCTCTTAACGAGCTTGCAAGATAGTGAATCTGATTTTAATGCTGTAATCACTATCTCTACCTCCTCGTCAGATAACAGTTTTAGTGGCAGAGATATGGTCTGA 2052 0.4669 MSLLSFTFFLTFFTTVTATQFDFDTLTLTTLKLIGDAHLTKNNTLTLTGHATVPSSAAARAFYSQPVTFRQPGNPSPASFTTFFSFSVTNLNPSSIGGGLAFLISSDDNTLGDPNGALGLAGAGDNFFAVEFDTLMDVGFNDINGNHVGIDENSVVSDKVSDLGTIGIDLKSGDAINAWVEFNGITKVLQVWVSYSNVKPKDPILKTDIDLGRILNEIMYVGFSGSTQGSTEVHTVQWWSFTSTFDSLSPPPPTVTTFMNPTTTTATSAPPPEESDKSTCHSGLCKKGVGAVVAGVVTAAAFVLVLFAGAVLIWVKKLKRVKRFEFVSIGFGSEVIKMPKEFSFKEIKLATKCFSDNRILGHGAFGTVYKGILKESGDIVAVKRCSHSGDQGKSGFLSELSIIGTLRHRNLVPLQGWCHEKGEILLVYEFMINGSLDKALYEARIPLPWCHRRKILLGVASVLAYLHHECENKVIHRDIKTSNIMLDEGFNARLGDFGLARKMEHDKSPDATVAAGTMGYLAPEYVLTGRATEKTDVFSFGAVVLEVACGRRPIEKDVCGVHGVGGISNLVEWVWSLHNEGNLLMVADPRLEGEFEEGEMRKVLLVGLACSHPDSMARPTMRSVVQMLLGEAEVPIVPRTKPSTSYSTSHLLTSLQDSESDFNAVITISTSSSDNSFSGRDMV* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0225 683 Gene3D - 17 251 - -
Lan4g0225 683 ProSiteProfiles Protein kinase domain profile. 354 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0225 683 SUPERFAMILY Protein kinase-like (PK-like) 336 667 IPR011009 -
Lan4g0225 683 CDD STKc_IRAK 360 628 - -
Lan4g0225 683 SUPERFAMILY Concanavalin A-like lectins/glucanases 17 252 IPR013320 -
Lan4g0225 683 SMART serkin_6 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0225 683 PANTHER - 9 674 - -
Lan4g0225 683 Gene3D Phosphorylase Kinase; domain 1 339 430 - -
Lan4g0225 683 ProSitePatterns Protein kinases ATP-binding region signature. 360 383 IPR017441 GO:0005524
Lan4g0225 683 Pfam Protein kinase domain 355 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan4g0225 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Lan4g0225 683 CDD lectin_legume_LecRK_Arcelin_ConA 35 245 IPR001220 GO:0030246
Lan4g0225 683 Pfam Legume lectin domain 19 246 IPR001220 GO:0030246
Lan4g0225 683 Gene3D Transferase(Phosphotransferase) domain 1 431 635 - -
Lan4g0225 683 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE VIII.2 9 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0225 Lan-Chr4 3704238 3706583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0225 1 665 Receptor kinase-like Gene Family AT3G53380 62.931 0.0 823
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Lan4g0225 Pkinase 6.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0225 - - var:108341139 883.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0225 4 3704238 3706583 Lan2g1074 2 21997329 21999854 LSH
Lan4g0225 4 3704238 3706583 Lan9g1264 9 19897465 19899968 LSH
Lan4g0225 4 3704238 3706583 Lan2g1074 2 21997329 21999854 PCT
Lan4g0225 4 3704238 3706583 Lan9g1264 9 19897465 19899968 PCT
Lan2g1074 2 21997329 21999854 Lan4g0225 4 3704238 3706583 PCT
Lan9g1264 9 19897465 19899968 Lan4g0225 4 3704238 3706583 PCT