Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0223 ATGCCCTCGGAGGGGATTTTCATTGAAACCACTTCAACAACTGCACCTGATCTTTCCCTTCATATAAGCCCTCCAAGCACTACTTTCTCCTCTTCTTCTTTGATTTGTAACAACAATAACACCCTAGTAGGTGGTGGTGCCACCAATTATGAAGCTCATAATTCTCCAGTAACCACTAATTTCCCTTCTAGGACTGTTTCTCATGCTCACACTGAGCTTTCTCTTGGAAGAAATTTCAGTGGTGGAGGAACATCTCTTGAGGAAACACCAAAACACCATCACCACAACAATAACAACAACAACCCTTATTTCCATAATCTTCACCATCAAGTGTCTAACACTAATAGTAGTTGTGGTGGTGCTACTACAGCAACAGCAAGTACTACAAATTGTACTAGGTTGAATCACATAAATTATGGGGTTTCCTTGCTTGATGTGTCATCTGAAGGGTTGAGACCAATCAAGGGGATTCCAGTGTATCACAACCGTTCATTCCCTTTTCTTCCTATAGAGAATACAAGAGACAAGGATCATCATCATCCCAAAACGTGCTTAAATCATCACATGCCTTCATATCCCTCTTTGTCCTCTTCTTATCCTTCTTCTTCTTCTTCTTCCTCACCCTACTTCGCCGCTGTGGCGCCCGATTTGGATCCCATGTCCTTTCTGAACTCCAGCACCTTCAATGGGCCCACAGCGGCATATAGGGCTGCAGCGGCAACCATGTTTAATGAGATTTCCGGTGAGGCTTTTAAATCTCATTATCCATTGCACCATCACTCATACTATGGGGTTGGAACCTCTCATCATGAGGTCTCTTCAGCAGGGTTGATGCGATCAAGGTTTTTGCCTAAGTTTCCAACAAAAAGGAGCATGAGAGCACCTAGAATGAGATGGACAAGCACCCTCCATGCTAGATTTGTTCATGCAGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACTCCAAAGTCAGTTCTTGAGCTCATGGATGTGAAGGATCTCACATTAGCTCATGTAAAAAGCCATTTGCAGATGTATCGAACTGTTAAGACTACCGACAAACCTGTAGCTTCTTCAGGCCTTTCAGATGGATCTGGAGAGGATGACATGTCTCCAATCGGCAGCAGCGGAAGCGGCGGTCATCGTCAATTTTCTGACCAAAGAGGCTGTCTGGATCGGCCAGTGCAACAAGACATGGACAACTCTTCCACCACCATTCTATGGAGTAACTCTTCAAGCAATAGAGAGCCATGGCCACAAACTAGTGCTAACAACATAGATGGTTTTAGACCACCCATCTTCGAGACACAACCAATATCAGGAAGGCATCAAATTCAGGACTGTGATTCAACCCAATTGAACAATAGTTTGTCAGGATCTAATTTAGAGTGCAAAAATCCAAACTTGGAGTTCACATTAGGGAGACCAGATTGGAATGGCAAAGGACAAGCCTAA 1455 0.4399 MPSEGIFIETTSTTAPDLSLHISPPSTTFSSSSLICNNNNTLVGGGATNYEAHNSPVTTNFPSRTVSHAHTELSLGRNFSGGGTSLEETPKHHHHNNNNNNPYFHNLHHQVSNTNSSCGGATTATASTTNCTRLNHINYGVSLLDVSSEGLRPIKGIPVYHNRSFPFLPIENTRDKDHHHPKTCLNHHMPSYPSLSSSYPSSSSSSSPYFAAVAPDLDPMSFLNSSTFNGPTAAYRAAAATMFNEISGEAFKSHYPLHHHSYYGVGTSHHEVSSAGLMRSRFLPKFPTKRSMRAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDKPVASSGLSDGSGEDDMSPIGSSGSGGHRQFSDQRGCLDRPVQQDMDNSSTTILWSNSSSNREPWPQTSANNIDGFRPPIFETQPISGRHQIQDCDSTQLNNSLSGSNLECKNPNLEFTLGRPDWNGKGQA* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0223 484 MobiDBLite consensus disorder prediction 404 436 - -
Lan4g0223 484 MobiDBLite consensus disorder prediction 74 105 - -
Lan4g0223 484 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 295 348 IPR006447 GO:0003677
Lan4g0223 484 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 484 - -
Lan4g0223 484 MobiDBLite consensus disorder prediction 369 383 - -
Lan4g0223 484 MobiDBLite consensus disorder prediction 354 387 - -
Lan4g0223 484 MobiDBLite consensus disorder prediction 404 427 - -
Lan4g0223 484 Gene3D - 294 351 - -
Lan4g0223 484 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 484 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lan4g0223 484 SUPERFAMILY Homeodomain-like 292 348 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0223 Lan-Chr4 3654084 3659925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0223 1 481 G2-like Transcription Factor Family AT5G16560 39.919 1.06e-77 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan4g0223 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0223 - - ccaj:109796302 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0223 4 3654084 3659925 Lan16g0598 16 7358420 7368066 LSH
Lan4g0223 4 3654084 3659925 Lan11g0328 11 2351569 2355648 PCT
Lan4g0223 4 3654084 3659925 Lan9g1267 9 19926788 19931668 PCT
Lan11g0328 11 2351569 2355648 Lan4g0223 4 3654084 3659925 PCT
Lan9g1267 9 19926788 19931668 Lan4g0223 4 3654084 3659925 PCT