Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0217 ATGCAGATATTATTGTTCTTCCATATGGACAAAGCAATTCTATCACTGCAAATCATGAAACCAATGTTTGATCTTGAAATGGAGGCCACAGAAGAATATGAATCTGAAGTTAGCAGCCAGGTTGCTTCCAATATTCATGAAACCTCTTCAAGGGCATATAGTGACAGCCACACTAACTCCTCCAATGTCACAAATCCAACAGCGATTCGTCCCTTTTCAGACGGTATCTCACTCGAGTTAACTCTCAACTTCAACAATAGTGAGGTTGGAGCAAGAGATTCAATAGGACTCTCATTCTCAAGCACTAGTGAGAGCAGAAATGAGCCTGCTTCTCAAGCTACTGCAGCAACCATTCCAAGAGTCTTTCCTTGCAATTATTGTCAACGCAAATTCTATAGCTCGCAGGCACTCGGTGGCCACCAAAATGCACACAAGAGAGAAAGAACATTAGCGAAGCGTGCAATGCGAATGGGGCTAATTTCTGAGAGGTATGCTAGTCTAGCATCTCTCCCTCTTCATGGTTCTTTCAGGTCCTTAGGGATAAAAGCACACTCTTCGCTGCACCATGGATTTTCAACACCAATAAGACCTGCTGAGATAAAAAGCAATGCAGAAGTTGAGCAAGGATATCTCGGTCTTCCAATATTCTTGGAGGATGATGAGGCAGAACTGTTGTGGCCGGGTAGTTTCCGACCGGTAAGAGATGATTCTCATCAGAATTTCATACTCACTGCTGGCAGTTCAAATTTGAGTTTTACTGAGATGCATCCACCAGTTGACATAGAGAAATCAGCACCTGAATTAACATTGAAACTTTGA 819 0.4274 MQILLFFHMDKAILSLQIMKPMFDLEMEATEEYESEVSSQVASNIHETSSRAYSDSHTNSSNVTNPTAIRPFSDGISLELTLNFNNSEVGARDSIGLSFSSTSESRNEPASQATAATIPRVFPCNYCQRKFYSSQALGGHQNAHKRERTLAKRAMRMGLISERYASLASLPLHGSFRSLGIKAHSSLHHGFSTPIRPAEIKSNAEVEQGYLGLPIFLEDDEAELLWPGSFRPVRDDSHQNFILTAGSSNLSFTEMHPPVDIEKSAPELTLKL* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0217 272 PANTHER ZINC FINGER PROTEIN 3-RELATED 19 272 - -
Lan4g0217 272 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Lan4g0217 272 SUPERFAMILY beta-beta-alpha zinc fingers 120 149 IPR036236 -
Lan4g0217 272 MobiDBLite consensus disorder prediction 36 66 - -
Lan4g0217 272 Gene3D Classic Zinc Finger 101 169 - -
Lan4g0217 272 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Lan4g0217 272 PANTHER ZINC FINGER PROTEIN JAGGED 19 272 IPR045320 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0217 Lan-Chr4 3560008 3562770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0217 120 272 C2H2 Transcription Factor Family AT1G66140 52.198 1.59e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan4g0217 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0217 - - lang:109345142 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0217 4 3560008 3562770 Lan16g0603 16 7402438 7405371 LSH
Lan4g0217 4 3560008 3562770 Lan11g0323 11 2109895 2112307 PCT
Lan11g0323 11 2109895 2112307 Lan4g0217 4 3560008 3562770 PCT