Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0202 ATGGGAAGACAACCTTGTTGTGACAAAGTTGGGTTGAAGAAGGGGCCATGGACTGCAGATGAGGATATGAAGCTTATCAATTTCATTCTCACTAATGGCCAATGTTGCTGGAGAGCTGTCCCTAAGCTAGCAGGGTTGTTAAGGTGTGGGAAAAGTTGCAGGCTTAGGTGGACAAACTACCTAAGGCCAGACCTAAAAAGAGGTCTTCTATCAGAAGAGGAGGAGAAAATGGTCATTGAACTCCATGCTAAGCTTGGAAATAGATGGTCTAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATCAAGAATCAATGGAATACTCACATAAAGAAAAATCTCAAGAAAATGGGAATTGACCCTATTACCCACAAGCCAATCTCTAATGCAAATGACCAAACTCAAACCCAACCAGAACAACAGACACAACAACCATTGAAAGAACAACATCAGCAACAATCTTCAACTGAGTCATCAACTATCATTGATGCTATAGAAGAAGACAAAACAATTACACCCTTATTTGACTCAATGGAGATAATGAATGAGTTCTGCATAGATGAAGTTCCAATAATAGAACCCAATAAGATTCTAGTTCCATATGCTCCATCCACTTCAACTAGTACAACATCTTCATCTTCTTCAAATTCAACAAACTTTATTGAAGACTTTCTGCTCCAAGATTTTGAGTTGTCTCATAAGCATAATGAAAATGATATTATAAATAGCATTGACAACAACAATAGCAGCATGGCATTGTGGGATGAAGACTTTATGAGAAGTTGGGATTTGCTGATAAAGGATGATGATGATGATAGCAGAAAGCAAGTGTTTGATTGCTCTCTTAGTCAGTATCAAAGAATTGTCATGGATTCAGAATCTTGGGACTATGGGTTGTTTTGA 909 0.3806 MGRQPCCDKVGLKKGPWTADEDMKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEEEEKMVIELHAKLGNRWSKIASHLPGRTDNEIKNQWNTHIKKNLKKMGIDPITHKPISNANDQTQTQPEQQTQQPLKEQHQQQSSTESSTIIDAIEEDKTITPLFDSMEIMNEFCIDEVPIIEPNKILVPYAPSTSTSTTSSSSSNSTNFIEDFLLQDFELSHKHNENDIINSIDNNNSSMALWDEDFMRSWDLLIKDDDDDSRKQVFDCSLSQYQRIVMDSESWDYGLF* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0202 302 Gene3D - 11 67 - -
Lan4g0202 302 CDD SANT 16 61 IPR001005 -
Lan4g0202 302 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan4g0202 302 Gene3D - 71 162 - -
Lan4g0202 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan4g0202 302 SMART sant 66 114 IPR001005 -
Lan4g0202 302 SMART sant 13 63 IPR001005 -
Lan4g0202 302 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan4g0202 302 CDD SANT 71 112 IPR001005 -
Lan4g0202 302 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Lan4g0202 302 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan4g0202 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan4g0202 302 MobiDBLite consensus disorder prediction 128 163 - -
Lan4g0202 302 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Lan4g0202 302 MobiDBLite consensus disorder prediction 123 165 - -
Lan4g0202 302 PANTHER MYB TRANSCRIPTION FACTOR 147 275 - -
Lan4g0202 302 PANTHER MYB TRANSCRIPTION FACTOR 1 150 - -
Lan4g0202 302 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 147 275 - -
Lan4g0202 302 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0202 Lan-Chr4 3368971 3371992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0202 1 302 MYB Transcription Factor Family AT5G16600 46.313 2.40e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan4g0202 Myb_DNA-binding 1.9e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0202 4 3368971 3371992 Lan16g0615 16 7621792 7624409 LSH
Lan11g0309 11 2003492 2005568 Lan4g0202 4 3368971 3371992 PCT
Lan9g1281 9 20014021 20025099 Lan4g0202 4 3368971 3371992 PCT