Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0200 ATGGCTTCTTTGGATATGTCACTCGATGATAGAATAAAGAACAGGAGTAGCAGAGGGCGAGGGAGAGGACGTGGAAGAGCCGGCTTTGGCCGTGGAGCAAGCAGCACCTTTAATGGTGGAAGAAGAACCGGTGCTGCTAATGGTGGAAGAATGTCTGGTGCTGCTCTTCGAGGTCCTCTTGTGCTTAATGCTCGGCCATCATCTTATGCTATTGCCAAGTCTATTCGTGGAACAAGGCCTTTTCCATGGCAGCGTACTGATTTGTTTGAAGATAGCCTAAGAGCTGCAGGGATATCAGGAATAGATGTAGGCACAAAGTTGTATATTTCCAATTTGGACCATGGAGTAACCAATGGAGACATAAGGGAACTTTTCTCTGAGCTTGGGGAGTTGAAGCGCTATGCTGTTCATTATGACAACAATGGACGTCCAAGTGGTTCAGCTGAAGTTGTCTATACAAGAAGAAGTGATGCATTTGCTGCTCTTAAACGATATAATAATGTACTTTTGGATGGAAAGCCCATGAAGATTGAGATTGTTGGTGCCAATGCGGAATTACCTATAACTGCTCGTGTGAATGTCACTGGGGTAACCGGGAGGAGGAAGAGGACAGTTGTGATGGCGCCTAGAGGTGTTCAAGCTGTTGGTCCAGTTGTGCCTAATCGTGGTTCTGGTTGGGGACGTCGTGGTGGCCACAAGAATGGGAGTGGTCGTGGCAGGGGTGGAGGCCGTGGACGTGGCCAGGGTGGAGGCCGGGGTGGAGGCCGGGGTGGAGGCCGAGGAGGGCGTGGGAAAAAAGAGGCTGTTGAGAAGTCAGCTGAACAACTTGACAAGGAACTGGAAACATATCATGCTGAGGCCATGAACATCTCATGA 876 0.4954 MASLDMSLDDRIKNRSSRGRGRGRGRAGFGRGASSTFNGGRRTGAANGGRMSGAALRGPLVLNARPSSYAIAKSIRGTRPFPWQRTDLFEDSLRAAGISGIDVGTKLYISNLDHGVTNGDIRELFSELGELKRYAVHYDNNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAELPITARVNVTGVTGRRKRTVVMAPRGVQAVGPVVPNRGSGWGRRGGHKNGSGRGRGGGRGRGQGGGRGGGRGGGRGGRGKKEAVEKSAEQLDKELETYHAEAMNIS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0200 291 Coils Coil 266 286 - -
Lan4g0200 291 CDD RRM_THOC4 105 179 - -
Lan4g0200 291 MobiDBLite consensus disorder prediction 215 274 - -
Lan4g0200 291 MobiDBLite consensus disorder prediction 1 50 - -
Lan4g0200 291 PANTHER THO COMPLEX SUBUNIT 4C 3 290 - -
Lan4g0200 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 182 IPR000504 GO:0003723
Lan4g0200 291 Gene3D - 99 270 IPR012677 -
Lan4g0200 291 MobiDBLite consensus disorder prediction 260 274 - -
Lan4g0200 291 SMART FoP_duplication_2 220 291 IPR025715 -
Lan4g0200 291 Pfam C-terminal duplication domain of Friend of PRMT1 229 285 IPR025715 -
Lan4g0200 291 SUPERFAMILY RNA-binding domain, RBD 104 257 IPR035979 GO:0003676
Lan4g0200 291 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 3 290 - -
Lan4g0200 291 SMART rrm1_1 106 178 IPR000504 GO:0003723
Lan4g0200 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 175 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0200 Lan-Chr4 3324291 3329238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0200 104 179 Eukaryotic Initiation Factors Gene Family AT2G23350 35.526 4.55e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0200 K12881 - gmx:100801491 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0200 4 3324291 3329238 Lan16g0618 16 7743594 7749385 LSH