Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0199 ATGGCCACTGGAGATTTTAACAAACTTCCTTCAATTCCTACTTATCCTGAGATGATTTTGAAAGCAATTGAAGCACTGAATGAAGAGAATGGTTCTAACAAGTCATCAATATCTAAGTACTTGGAGTCCACATGGGGTGGATTGCCTCAGGGACACAAGGCACTTCTCAATGTGCACCTTGCAAAATTGAGGGACAATGGTGAGCTAGTATTTTGGAAAAACAACTATACCAAGCGTGACCCTAACGCACCAACGCGTCGGGGTCGTGGCCGGCCACCCAAGTCCAAGGATCCCCTAGCACCTGACACTGTTGTGGCATCGCCGAAGCCTAGAGGCCGCCCTCCTAAGGACCCAAATGAGCCTCCAAGGCCACCTAAAGTGAAGACTCCAAATGGGAGTAGCAGGCCGAGAGGGCGGCCCAGGAAGATTGCTCGACCTACTAGAGGCTTCGGCGGAACTCCAATAGTGTCAGTGGCAGGTAGTAGGAGGCCAAGAGGTAGGCCTCCTAAGATGAAGGCACCATTTACAGAAATTACTGTTTAA 543 0.4972 MATGDFNKLPSIPTYPEMILKAIEALNEENGSNKSSISKYLESTWGGLPQGHKALLNVHLAKLRDNGELVFWKNNYTKRDPNAPTRRGRGRPPKSKDPLAPDTVVASPKPRGRPPKDPNEPPRPPKVKTPNGSSRPRGRPRKIARPTRGFGGTPIVSVAGSRRPRGRPPKMKAPFTEITV* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0199 180 MobiDBLite consensus disorder prediction 80 96 - -
Lan4g0199 180 Pfam linker histone H1 and H5 family 13 73 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g0199 180 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 11 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g0199 180 PANTHER HISTONE H1 6 176 - -
Lan4g0199 180 SUPERFAMILY "Winged helix" DNA-binding domain 10 93 IPR036390 -
Lan4g0199 180 SMART AT_hook_2 162 174 IPR017956 GO:0003677
Lan4g0199 180 SMART AT_hook_2 134 146 IPR017956 GO:0003677
Lan4g0199 180 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Lan4g0199 180 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lan4g0199 180 PANTHER HMG-Y-RELATED PROTEIN A 6 176 IPR031059 GO:0003677|GO:0005634
Lan4g0199 180 SMART h15plus2 9 75 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan4g0199 180 MobiDBLite consensus disorder prediction 76 180 - -
Lan4g0199 180 Gene3D - 8 90 IPR036388 -
Lan4g0199 180 Pfam AT hook motif 163 172 IPR017956 GO:0003677
Lan4g0199 180 Pfam AT hook motif 87 97 IPR017956 GO:0003677
Lan4g0199 180 Pfam AT hook motif 135 144 IPR017956 GO:0003677
Lan4g0199 180 Pfam AT hook motif 108 119 IPR017956 GO:0003677
Lan4g0199 180 PRINTS AT-hook-like domain signature 86 96 IPR017956 GO:0003677
Lan4g0199 180 PRINTS AT-hook-like domain signature 106 117 IPR017956 GO:0003677
Lan4g0199 180 PRINTS AT-hook-like domain signature 160 170 IPR017956 GO:0003677
Lan4g0199 180 PRINTS High mobility group protein (HMGY) signature 84 96 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lan4g0199 180 PRINTS High mobility group protein (HMGY) signature 110 121 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Lan4g0199 180 PRINTS High mobility group protein (HMGY) signature 123 142 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0199 Lan-Chr4 3321217 3323029 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0199 - - gmx:100803968 226.868
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0199 4 3321217 3323029 Lan11g0305 11 1971611 1972836 PCT
Lan4g0199 4 3321217 3323029 Lan9g1282 9 20025275 20026479 PCT
Lan9g1283 9 20027195 20028488 Lan4g0199 4 3321217 3323029 PCT