Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0193 ATGGAGATTATTACCTCCTTGTCACTTCATGATGGGGTCAATGAGCACCACATCAAATCTGTTCTTGATGAGGAAGATGGCTCACAAAGCACTAACGGGCTCAGCAATGATTCACCTATACCCCATTCTCCTCCACTATGTGGAAGTGGCAATGGTTATGTTTATAAGGGCACAAACACAAACTATCACCTTGAAAAAGAAGAAGAATCTCTTATCAATTTCAATGCCAACAATCTCATGCATCCTACTGAATCTTTACTTAGCTTTCACTTGAAAGATAACATTCAGAATGAGTACTGTGTTTGGGAGAATAATTTGCATCAAGGGTATAGCCAATGTGATCAGATTAGTCCTAGAAACACAGGAGAATTGCGTATGGTGCAAGATTTCAATTGCTTTCAAACTGCTAGTGGCTATAGCTCTATAATGAATTGTGCAAAAGAGAAGCAATATGGTGAAAGTTCATATGGTTGGCTCTACTCTGAACCAACTACCCTTGTTGATAGCCTCCAAGAGCCAGGAGCACAAGAACAAGTCATTAAAAAGCGCCCTTCTAAGGGAGAGAACATGAAAGCTTCCAAGAAGCAATGCACAACTGAGAGTAAAACTTCAAAACCTAAGGCAAGTCTATCTAAGGATCCTCAAAGTGTGGCTGCCAAGAATAGAAGAGAGAGGATAAGTGAACGGATGAAGGTCTTGCAAGAACTTGTGCCTAATGGCTCCAAGGTTGATTTGGTTACCATGCTGGAGAAAGCAATTAGTTATGTTAAGTTTCTTCAATTGCAAGTGAAGGTTTTGGCAACTGATGAATTTTGGCCTGTTCAAGGTGGAAAGGCTCCTGATATTTCTCAAGTAAAAGAAGCCATTGACGCCATTCTATCATCCCAAAGAGAAAGAAGTTCAAGCACAAAGTAG 915 0.4033 MEIITSLSLHDGVNEHHIKSVLDEEDGSQSTNGLSNDSPIPHSPPLCGSGNGYVYKGTNTNYHLEKEEESLINFNANNLMHPTESLLSFHLKDNIQNEYCVWENNLHQGYSQCDQISPRNTGELRMVQDFNCFQTASGYSSIMNCAKEKQYGESSYGWLYSEPTTLVDSLQEPGAQEQVIKKRPSKGENMKASKKQCTTESKTSKPKASLSKDPQSVAAKNRRERISERMKVLQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWPVQGGKAPDISQVKEAIDAILSSQRERSSSTK* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0193 304 MobiDBLite consensus disorder prediction 174 223 - -
Lan4g0193 304 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Lan4g0193 304 MobiDBLite consensus disorder prediction 25 39 - -
Lan4g0193 304 MobiDBLite consensus disorder prediction 202 216 - -
Lan4g0193 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 296 - -
Lan4g0193 304 CDD bHLH_AtIND_like 211 273 - -
Lan4g0193 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 296 - -
Lan4g0193 304 Gene3D - 204 267 IPR036638 GO:0046983
Lan4g0193 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Lan4g0193 304 SMART finulus 216 265 IPR011598 GO:0046983
Lan4g0193 304 MobiDBLite consensus disorder prediction 23 42 - -
Lan4g0193 304 MobiDBLite consensus disorder prediction 179 201 - -
Lan4g0193 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 214 269 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0193 Lan-Chr4 3233161 3234951 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0193 66 304 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 49.402 5.89e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan4g0193 HLH 4.4e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0193 - - lang:109345122 614.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0193 4 3233161 3234951 Lan16g0630 16 8018184 8020002 LSH