Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0192 ATGGACTCTCCTCATTCTCCTTCTTCACCATCATCATCTTCTTCTTCCTCCTCTGAAAGGGACCCAACCTTCGAACCCGACGAGCCGAGAACGCCGTTGGCGGTGCGCCGTGCTCTGCAGTTTCTCAACTCCGATGAGCCACAGATGAGGATCCAGGCCGCCCGTGATATACGGCGGCTCACCAAGACGTCGCACCGGTGCCGCCGACAGCTTTCTGAGGCTGTCGGCCCACTCGTTTCCATGCTCCGATTCGACTCGGCCGAGTCGCATGAACCCGCTCTCCTCGCGTTGCTTAATCTCGCCGTTAAAGATGAAAAGAATAAAATCAATATTGTTGAGGCTGGTGCATTAGAACCTATAATTAAATTCCTAAAGTCAGAAGATCTAAATCTTCAGGAATCAGCAACTGCAGCATTGCTCACACTATCTGCCTCTTTAACCAACAAACCAATCATCAGTGCTTGTGGAGCCATTCCTCTTCTTGTGGAGATTCTTAAAGGTGGAAGTCCACAAGCTAAAGCTGATGCAGTAACAGCTCTATCTAATTTATCAACACACCCTGATAATCTCAGCATCATCATGGACACGAATCCGACCCGTTACATAGTTGACATCCTTAAAACCTGCAAGAAGTCCTCAAAAACAGCTGAGAAATGCTGTGCGTTGATAGAATCTTTGGTGGATCATGATGAAGGAAGAACCACCTTAACTTCGGAAGAAGGTGGTGTTCTTGCAGTTGTGGAAGTTCTTGAAAGTGGCACTCTCCAAAGTAGGGAACATGCTGTTGGAGCATTATTGACAATGTGCAATAGTGACAGATGTAAATATAGGGAACCAATTCTTAGAGAAGGTGTTATTCCAGGACTTCTTGAACTTACTGTTCAAGGAACACCAAAGTCTCAAACAAAAGCAAGGACCCTTTTGCAGTTACTGAGAGAATCTCCTTATCCAAGATCAGAAATTCAACCTGACACTCTTGAGAATATAGTATGCAATATCATATCACAGATTGATGGTGATGATCAACCTGGTAAAGCAAAGAAGATGCTGGCTGAGATGGTTCAAGTCAGCATGGAACAGAGTTTGAGACATCTGCAGCAAAGGGCTATTGTATGCACCCCTAGTGATCTGCCTATAGCTGGTTGTGCTTCTGAAGTTCCTTCGAAATGA 1170 0.4547 MDSPHSPSSPSSSSSSSSERDPTFEPDEPRTPLAVRRALQFLNSDEPQMRIQAARDIRRLTKTSHRCRRQLSEAVGPLVSMLRFDSAESHEPALLALLNLAVKDEKNKINIVEAGALEPIIKFLKSEDLNLQESATAALLTLSASLTNKPIISACGAIPLLVEILKGGSPQAKADAVTALSNLSTHPDNLSIIMDTNPTRYIVDILKTCKKSSKTAEKCCALIESLVDHDEGRTTLTSEEGGVLAVVEVLESGTLQSREHAVGALLTMCNSDRCKYREPILREGVIPGLLELTVQGTPKSQTKARTLLQLLRESPYPRSEIQPDTLENIVCNIISQIDGDDQPGKAKKMLAEMVQVSMEQSLRHLQQRAIVCTPSDLPIAGCASEVPSK* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0192 389 SUPERFAMILY ARM repeat 37 331 IPR016024 -
Lan4g0192 389 MobiDBLite consensus disorder prediction 1 20 - -
Lan4g0192 389 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 372 - -
Lan4g0192 389 Pfam Armadillo/beta-catenin-like repeat 105 143 IPR000225 GO:0005515
Lan4g0192 389 Pfam Armadillo/beta-catenin-like repeat 148 184 IPR000225 GO:0005515
Lan4g0192 389 Gene3D - 24 370 IPR011989 -
Lan4g0192 389 MobiDBLite consensus disorder prediction 1 32 - -
Lan4g0192 389 SMART arm_5 229 270 IPR000225 GO:0005515
Lan4g0192 389 SMART arm_5 61 102 IPR000225 GO:0005515
Lan4g0192 389 SMART arm_5 145 185 IPR000225 GO:0005515
Lan4g0192 389 SMART arm_5 104 144 IPR000225 GO:0005515
Lan4g0192 389 PANTHER U BOX DOMAIN-CONTAINING 12 372 - -
Lan4g0192 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 115 157 IPR000225 GO:0005515
Lan4g0192 389 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 156 198 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0192 Lan-Chr4 3201788 3205575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0192 35 312 U-box Gene Family AT2G23140 34.286 4.43e-40 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0192 - - gmx:100780954 618.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0192 4 3201788 3205575 Lan16g0631 16 8065090 8071047 LSH