Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0185 ATGAGTTTTATTTTTGGAGGAACAAGAGCAGATATAGAAAATGGATTTCCAGGGTTTATACCTCAGAGGCGTACATTGCGTGTTCATGCTGCACGTCCAAGTAATTCCAATTCTCTCACTTTTCTTGTAACAGTTCTCCTGTTATTCATGATACTGAACTCTCAACAAATGTCACCAAATTTCATGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTACGCAACGTTTCAACAGCTTCAAGTGCAGGCCCAAGCTCATGCAGCAACAGCCAGTGGCCTTCTTGGACACACAGAACTGCGGTTGCATATGCCACCATCAATAGCACTGACAAGCCGTGGGCGGCTGCAAGGCCTCAGACTTCAGCTTGCACTTCTTGATCGAGAGTTCGACGATCTAGATTATGAAACTTTAAGAGCTCTGGATTCAGATAATGCTTCTTCTGGATCTTCAATGACCGAGGAAGAGATCAATGCTCTTCCTGTCCACAAATACAAGGGTTCTGGTCCTCAAAGCAGTAGTTCCTCAATGCAACAAGCTTCATCTTCCACATCTGCCGAGAAGAAGCAAGATCGTTCAAACGCAACTGGGAGCATGAAAGTCTCTGATGATGAGCTCACTTGCAGCGTATGTTTGGAGCAAGTTAATGTTGGAGATATACTCCGTAGCTTGCCCTGCTTGCATCAGTTTCACGCCAATTGCATCGATCCCTGGCTGCGGCAACAAGGGACATGCCCTGTCTGTAAATTCCGAGCAGGATCTGGATGGAATGAAAGTGGGCATGATGATATTGCGGACATGGTTTGA 822 0.4574 MSFIFGGTRADIENGFPGFIPQRRTLRVHAARPSNSNSLTFLVTVLLLFMILNSQQMSPNFMLWLVLGVFLMATMLRMYATFQQLQVQAQAHAATASGLLGHTELRLHMPPSIALTSRGRLQGLRLQLALLDREFDDLDYETLRALDSDNASSGSSMTEEEINALPVHKYKGSGPQSSSSSMQQASSSTSAEKKQDRSNATGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWNESGHDDIADMV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0185 273 CDD RING-H2_PA-TM-RING 212 254 - -
Lan4g0185 273 SMART ring_2 213 253 IPR001841 -
Lan4g0185 273 MobiDBLite consensus disorder prediction 172 204 - -
Lan4g0185 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 268 - -
Lan4g0185 273 PANTHER TARGET OF ERK KINASE MPK-1 1 268 - -
Lan4g0185 273 MobiDBLite consensus disorder prediction 168 204 - -
Lan4g0185 273 SUPERFAMILY RING/U-box 207 257 - -
Lan4g0185 273 ProSiteProfiles Zinc finger RING-type profile. 213 254 IPR001841 -
Lan4g0185 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 258 IPR013083 -
Lan4g0185 273 Pfam Ring finger domain 212 254 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0185 Lan-Chr4 3011688 3016829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0185 1 273 C3H Transcription Factor Family AT3G55530 74.275 5.97e-140 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0185 K16283 - gmx:100777936 445.277