Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0184 ATGTCTTCTGCGACATCCTCGTATTGGTGTTACAGGTGTAGTCGTTTTATAAGGGTATGGACGCAGGACACGGTGGTTTGCCCCGATTGCAATGGCGGTTTCATCGAGGAGATCGAGCATCCAGAGCGTGATACTCACGCGGACAACCGGCAGCAACGACTCCCGGCAGCAGCGATGTACATGATTGGCCAGCGCCCAAATTCTGATCAGAATTCTCAGCCCCCCATTCGTCGAACCAGCCGCGGCGGAGGTGACCGGTCACCGTTTAATCCGGTCATTGTTCTGCGCGGCGGAAGAACGACGGAGGGGGCTACAAGGCAGGACGGTGCGGAGGGTGGCGGGTTTGAGCTTTTCTATGATGATGGTGCAGGTTCTGGTCTCAGGCCTTTGCCTCCTAGCATGTCTGAGTTTCTATTTGGATCTGGATTTGATAGGTTATTGGAACAGCTTTCTCAAATTGAAACTAATGGTATTGGTAGGTATGAAAATCCTCCTGCTTCAAAATCTGCAATTGATTCATTGCCAACAATTGAGATTGGTGAGGATCATTTAGAATTGGAATCACATTGTGCTGTTTGTATGGAACCTTTTGAATTGTGCACTTCCGTTAAGGAAATGCCTTGTAAGCATATATACCATGAAGAATGCATTCTTCCATGGCTTGCACTTCACAATTCATGCCCCGTTTGTCGACACGAATTGTCTGTTGATACCCCTAGCCATAGTACACATTTGACGAGGAATTCGACAAATTCGCGTGCTTTGAATGAAAATGAAAATGCAGGGTTGACTATTTGGAGGTTACCGGGTGGGGGATTCGCTGTAGGGAGGTTTTCTGGTGGGAGAAGAGGCAGCGAAAGGGAGCCTCCAGTTGTTTATACCGAAATGGATGGTGGTTTTAACAATGGTGGTGAACCTAGGGTGATTTCTTGGTCATCTAGAGGGAGTAGAGGAGGAAGAGAGGGTGGTGGTTTGCAAAGGTTTTTTCATAACTTGTTTGGTTGCTTTAGAGGTGGTGGAATTCGAATGCAGCAACGGTCTACTCCAAGTACCGCATCTCCATCCATGGCGAGGGAAAGTTCATCACGTGCTAATATGGTTCCCTCTCCACGTTCACGCAGAACTTGGTCTATGGATGTGAACAGTGGAATGAGATCATGGTAA 1164 0.4785 MSSATSSYWCYRCSRFIRVWTQDTVVCPDCNGGFIEEIEHPERDTHADNRQQRLPAAAMYMIGQRPNSDQNSQPPIRRTSRGGGDRSPFNPVIVLRGGRTTEGATRQDGAEGGGFELFYDDGAGSGLRPLPPSMSEFLFGSGFDRLLEQLSQIETNGIGRYENPPASKSAIDSLPTIEIGEDHLELESHCAVCMEPFELCTSVKEMPCKHIYHEECILPWLALHNSCPVCRHELSVDTPSHSTHLTRNSTNSRALNENENAGLTIWRLPGGGFAVGRFSGGRRGSEREPPVVYTEMDGGFNNGGEPRVISWSSRGSRGGREGGGLQRFFHNLFGCFRGGGIRMQQRSTPSTASPSMARESSSRANMVPSPRSRRTWSMDVNSGMRSW* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0184 387 MobiDBLite consensus disorder prediction 343 387 - -
Lan4g0184 387 Pfam Ring finger domain 189 231 IPR001841 -
Lan4g0184 387 ProSiteProfiles Zinc finger RING-type profile. 190 231 IPR001841 -
Lan4g0184 387 SMART ring_2 190 230 IPR001841 -
Lan4g0184 387 CDD RING-H2_RNF181 190 234 - -
Lan4g0184 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 333 - -
Lan4g0184 387 SUPERFAMILY RING/U-box 170 240 - -
Lan4g0184 387 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Lan4g0184 387 MobiDBLite consensus disorder prediction 340 387 - -
Lan4g0184 387 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 333 - -
Lan4g0184 387 MobiDBLite consensus disorder prediction 64 78 - -
Lan4g0184 387 Pfam Protein of unknown function (DUF1117) 262 365 IPR010543 -
Lan4g0184 387 MobiDBLite consensus disorder prediction 64 113 - -
Lan4g0184 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 154 236 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0184 Lan-Chr4 2995813 2997766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0184 129 241 C3H Transcription Factor Family AT5G01980 40.708 1.81e-23 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0184 4 2995813 2997766 Lan16g0645 16 8455070 8457165 LSH