Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0178 ATGAATATGGTTGAGTTGTGTTGTGGTGTGGTTGGAGAAAGTGAATCTCAAACTCCAATTGAACCAACCTCACGGCGTCGCAGCCTTGACGTCCTCCCTCTCAAATACATAGCTGACGTGGCACCGTCGCAGCCTGGCTCTTCTCGTAAGCGGCCAAAGCTCGACCTCTCCGATTGCCAAAACGCCGTGGAAAACCGCAAATCTGTTCACGACGGCGATAATCAAACTAAGGAAGAAGGTGATTCAAACGTAAACGACAAAGTCGTGTCGGGAACGGAGGTGATTGAACAGTTACCTCCTCCGAAGTTTGGAATAACATCTGTTTGTGGTAGAAGAAGAGATATGGAAGATTCCGTTTCGGTTCATCCTTTCTTCTCTCAACAAGACTTCCATTACTTCGGTGTCTTCGATGGACACGGTTGCTCTCATGTTGCGACTATGTGTAAGGAGAGGCTTCACCAGATTTTGAACGAAGAGATTCGCGAAGCGCAAGAGAAGAATGCGGAATTGGAATTGGAATGGAAACAGATGATGGAAAAAGGTTTTGGTCGCATGGACGATGAGGTTCAGAAGCGGAGCCATAACCATAACCAAAGCATAAGGTGCAGGTGTGAGCTTCAGACTCCACACTGCGATGCTGTCGGATCCACCGCCGTTGTCGTCGTCGTGACACCGGAGAAAATCATCGTCTCCAACTGCGGTGATTCGCGCGCTGTTCTCTGCCGTAAAGGCGTCGCTATCCCTCTCTCCTCCGATCACAAGCCGGACCGGCCAGACGAGATGAACCGGGTTCAATCAGCTGGAGGGCGCGTTATTAATTGGGATGTCCCTAGAGTTCTTGGAGTGTTATCCATGTCTAGAGCGATAGGTGACAATTATCTGAAGCCTTATGTGATATCTGAACCGGAGGTGATGGTGATGGAACGGAGTAACGACGATGAGTGTTTGATACTGGCAAGTGATGGTTTGTGGGATGTGGTATCAAATGAGACAGCATGCGGGGTGGTGAGGATGTGCCTCAAGGCAGAGAGGCCACCATTGCCACCTGGGTCTCCGGGGACGGTGGATGGTTCAGACAGGGCGTGCTCTGATGCGTCCATTTTGCTTACCAAGTTGGCATTGGCAAGGCATAGTTCGGATAATGTGAGCGTGGTTGTGGTTGATTTGAAAAGAGATAGACAATTCAGTTGCAGAAACGTCAACAACAACAACAACGTTAATTAA 1224 0.4926 MNMVELCCGVVGESESQTPIEPTSRRRSLDVLPLKYIADVAPSQPGSSRKRPKLDLSDCQNAVENRKSVHDGDNQTKEEGDSNVNDKVVSGTEVIEQLPPPKFGITSVCGRRRDMEDSVSVHPFFSQQDFHYFGVFDGHGCSHVATMCKERLHQILNEEIREAQEKNAELELEWKQMMEKGFGRMDDEVQKRSHNHNQSIRCRCELQTPHCDAVGSTAVVVVVTPEKIIVSNCGDSRAVLCRKGVAIPLSSDHKPDRPDEMNRVQSAGGRVINWDVPRVLGVLSMSRAIGDNYLKPYVISEPEVMVMERSNDDECLILASDGLWDVVSNETACGVVRMCLKAERPPLPPGSPGTVDGSDRACSDASILLTKLALARHSSDNVSVVVVDLKRDRQFSCRNVNNNNNVN* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0178 407 ProSitePatterns PPM-type phosphatase domain signature. 132 140 IPR000222 GO:0043169
Lan4g0178 407 CDD PP2Cc 102 345 IPR001932 -
Lan4g0178 407 ProSiteProfiles PPM-type phosphatase domain profile. 102 389 IPR001932 -
Lan4g0178 407 SMART PP2C_4 89 387 IPR001932 -
Lan4g0178 407 Gene3D - 99 398 IPR036457 -
Lan4g0178 407 SUPERFAMILY PP2C-like 93 390 IPR036457 -
Lan4g0178 407 Pfam Protein phosphatase 2C 103 382 IPR001932 -
Lan4g0178 407 PANTHER ALPHABET, ISOFORM E-RELATED 40 393 - -
Lan4g0178 407 Coils Coil 149 180 - -
Lan4g0178 407 MobiDBLite consensus disorder prediction 64 84 - -
Lan4g0178 407 PANTHER PROTEIN PHOSPHATASE 2C 37 40 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0178 Lan-Chr4 2901578 2903503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0178 79 394 PP2C-type Phosphatase Gene Family AT1G07430 57.265 5.02e-134 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0178 K14497 - gmx:100796161 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0178 4 2901578 2903503 Lan11g0273 11 1787657 1789728 PCT
Lan4g0178 4 2901578 2903503 Lan9g1303 9 20314559 20316356 PCT
Lan11g0273 11 1787657 1789728 Lan4g0178 4 2901578 2903503 PCT
Lan9g1303 9 20314559 20316356 Lan4g0178 4 2901578 2903503 PCT