Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0175 ATGAAACCCACCCAATTGGAAGAAAGGATGAGCGATTTCAAGCCATTCTCCGATTCATCGCAACCCGGTGGCTCCTCCTCCTCACGCTCCATCAGTGAAACCATCAATGGCTCTCACGAATTCACCATAAATGGTTACTCTTTGGCCAAAGGAATGGGTCCCGGAAAGTACATCATGAGTGACACATTCAGTGTTGGTGGTTACGATTGGGCAATTTACTTTTACCCTGATGGGAAGAACCCTGAGGATAATTCAATGTATGTTTCCGTGTTCATCGCTCTCGCGAGCGAAGGAACCGATGTTAGGGCGCTGTTTAAGTTGATACTTGTTGATCAGACTCCTAAAGGGAATAATAAAGTGCATAGCCACTTTGATCGGCCACTTGAAAGTGGACCTTATACTTTGAAGTATAGGGCTAGCATGTGGGGTTACAAGCGTTTTTTCAGAAGGTCACTTTTGGAGACCTCAGACTATTTGAAGAATGACTGCCTTATCATGGATTGCACCGTTGGTGTTGTCAAAACTCGGTTTGAGGGGTCTAAACAGGGTATTGTTGTGCCACAGTCGAACATGGGCCGAGATTTTAAGGACTTGTTCGAATCTGAAGTTGGCTGTGACATAGTTTTCAAGGTCAAGAGTGAAAGCTTCAAAGCTCACAAGTTGATACTTGCTGCCCGATCTCCTGTGTTTAGAGCTCAGTTTTTTGGACTTGTTGGGGATCCTAGCATAGAAGAAGTGGTGGTAGAGGATATTGAGCCCTTTATCTTCAAGGCAATGCTTCTTTTCATTTACTCAGACAAGCTTCCTGACATATATGAGGTTATGGGCTCGGCACAGATTTGCCCATATACTGTCATGGTGCAACATCTCTTGGCTGCCGCTGATCTTTATAACCTTGATCGGCTAAAAATATTATGTGAATCAAAATTGTGTGATGAAATCAATGTTGACACCGTGGCCACAACACTTGCCCTGGCTGAGCAACACCACTGTCCACAGCTTAAGGCAATGTGCTTAAAATTTATTGCAAATCCAACAAACTTGGGAGCTGTAATGCAGTCTGAAGCTTTTATGCATTTGAAAGAGAGCTGCCCGACAATGTTGTTGGAATTGCTGGAGACGTTCACATTAGTGGATGATGACATAAGCCAGCCGTTGAGCAGGAAGAGAAGTGTCAGTAGCATATACGGGCAAGATTTAGCAGACGGTGCAGTTGCTGAATCGGCTAATCCAAATGTCAGGCGTGTTAGGAGGCGGACATGA 1263 0.4466 MKPTQLEERMSDFKPFSDSSQPGGSSSSRSISETINGSHEFTINGYSLAKGMGPGKYIMSDTFSVGGYDWAIYFYPDGKNPEDNSMYVSVFIALASEGTDVRALFKLILVDQTPKGNNKVHSHFDRPLESGPYTLKYRASMWGYKRFFRRSLLETSDYLKNDCLIMDCTVGVVKTRFEGSKQGIVVPQSNMGRDFKDLFESEVGCDIVFKVKSESFKAHKLILAARSPVFRAQFFGLVGDPSIEEVVVEDIEPFIFKAMLLFIYSDKLPDIYEVMGSAQICPYTVMVQHLLAAADLYNLDRLKILCESKLCDEINVDTVATTLALAEQHHCPQLKAMCLKFIANPTNLGAVMQSEAFMHLKESCPTMLLELLETFTLVDDDISQPLSRKRSVSSIYGQDLADGAVAESANPNVRRVRRRT* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0175 420 SUPERFAMILY TRAF domain-like 33 172 - -
Lan4g0175 420 SMART BTB_4 205 314 IPR000210 GO:0005515
Lan4g0175 420 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 35 175 IPR008974 GO:0005515
Lan4g0175 420 ProSiteProfiles BTB domain profile. 205 268 IPR000210 GO:0005515
Lan4g0175 420 CDD MATH 37 170 IPR002083 GO:0005515
Lan4g0175 420 Pfam BTB/POZ domain 195 312 IPR000210 GO:0005515
Lan4g0175 420 SUPERFAMILY POZ domain 187 312 IPR011333 -
Lan4g0175 420 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 3 24 385 - -
Lan4g0175 420 Gene3D Potassium Channel Kv1.1; Chain A 181 309 IPR011333 -
Lan4g0175 420 Gene3D - 313 393 - -
Lan4g0175 420 MobiDBLite consensus disorder prediction 1 32 - -
Lan4g0175 420 CDD BTB_POZ_BPM_plant 191 311 - -
Lan4g0175 420 ProSiteProfiles MATH/TRAF domain profile. 36 170 IPR002083 GO:0005515
Lan4g0175 420 SMART math_3 41 153 IPR002083 GO:0005515
Lan4g0175 420 MobiDBLite consensus disorder prediction 15 32 - -
Lan4g0175 420 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 24 385 IPR045005 GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0175 Lan-Chr4 2849131 2855402 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan4g0175 BTB 1.2e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0175 K10523 - gmx:100786636 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0175 4 2849131 2855402 Lan16g0661 16 8687828 8694320 LSH