Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0173 ATGAAGGCATTGATTCTTGTCGGAGGGTTTGGAACAAGGTTGAGGCCATTGACACTTAGTGTTCCTAAGCCTCTTGTTGATTTTGCTAACAAGCCCATGATTTTGCATCAGATAGAAGCTCTTAAGGCCATTGGAGTCAACGAAGTGGTACTAGCTATCAATTACCAACCAGAGGTGATGTTGAATTTCTTGAAGGAGTTTGAAGCAAAACTTGGCATCAAAATCACATGTTCTCAAGAAACTGAACCGCTGGGGACAGCAGGTCCCTTGGCTCTTGCAAGGGATAAGCTGATAGATGATTCTGGAAAGCCATTTTTTGTTCTCAACAGTGACGTTATTAGCGAGTACCCACTTAAAGAAATGATTGAATTCCACAAATCCCATGGAGGAGAAGCTTCCATAATGGTGACAAAGGTTGATGAGCCATCAAAATATGGTGTGGTTGTGATGGAGGAGACCACCGGTCAGGTTGACAAATTTGTGGAGAAACCGAAGCTGTTTGTTGGTAACAAAATCAATGCTGGAATCTATCTATTGAACCCCTCAGTTTTGGATCGAATTGAACTGAGACCCACTTCTATCGAGAAAGAGGTTTTTCCGAAGATTGCAGCAGAGAAAAAGCTATATGCAATGGTGCTTCCGGGATTTTGGATGGACATTGGACAACCAAGGGACTATATTTCTGGCCTGAGACTCTACTTGGACTCACTGAGGAAAAATAATTCTTCTAAGCTGGCCAGTGGCCCTCACATTCTGGGGAATGTCATTGTGGATGAGACTGCCAAAATCGGTGATGGGTGTCTCATTGGACCTGATGTTGCAATTGGTCCTGGCTGCATTGTTGAATCCGGTGTCAGGCTCTCATGCTGCACTGTAATGCGTGGAGTACGCATTAAGAAACACGCTTGCATCTCCAGCAGTATCATCGGGTGGCATTCCACTGTCGGGCAATGGGCTCGTGTGGAGAATATGACCATCCTTGGAGAAGATGTTCATGTAGGTGATGAAATTTACAGCAATGGTGGTGTGGTTTTGCCCCACAAGGAGATCAAGTCAAGCATTCCGAACCCAGAGATAGTTATGTGA 1086 0.4466 MKALILVGGFGTRLRPLTLSVPKPLVDFANKPMILHQIEALKAIGVNEVVLAINYQPEVMLNFLKEFEAKLGIKITCSQETEPLGTAGPLALARDKLIDDSGKPFFVLNSDVISEYPLKEMIEFHKSHGGEASIMVTKVDEPSKYGVVVMEETTGQVDKFVEKPKLFVGNKINAGIYLLNPSVLDRIELRPTSIEKEVFPKIAAEKKLYAMVLPGFWMDIGQPRDYISGLRLYLDSLRKNNSSKLASGPHILGNVIVDETAKIGDGCLIGPDVAIGPGCIVESGVRLSCCTVMRGVRIKKHACISSSIIGWHSTVGQWARVENMTILGEDVHVGDEIYSNGGVVLPHKEIKSSIPNPEIVM* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0173 361 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 228 IPR029044 -
Lan4g0173 361 Gene3D Hexapeptide repeat proteins 229 358 - -
Lan4g0173 361 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1 312 IPR029044 -
Lan4g0173 361 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 1 361 - -
Lan4g0173 361 Pfam Nucleotidyl transferase 2 229 IPR005835 GO:0009058|GO:0016779
Lan4g0173 361 CDD M1P_guanylylT_B_like_N 1 234 IPR045233 GO:0004475|GO:0005525|GO:0009298
Lan4g0173 361 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE FAMILY PROTEIN-RELATED 1 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0173 Lan-Chr4 2829235 2833591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0173 1 185 Eukaryotic Initiation Factors Gene Family AT4G18300 22.798 2.00e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0173 K00966 - sind:105160944 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0173 4 2829235 2833591 Lan16g0664 16 8753846 8758581 LSH
Lan4g0173 4 2829235 2833591 Lan2g1109 2 22385896 22389174 PCT
Lan4g0173 4 2829235 2833591 Lan11g0271 11 1769972 1773154 PCT
Lan4g0173 4 2829235 2833591 Lan9g1305 9 20332375 20335339 PCT
Lan2g1109 2 22385896 22389174 Lan4g0173 4 2829235 2833591 PCT
Lan11g0271 11 1769972 1773154 Lan4g0173 4 2829235 2833591 PCT
Lan9g1305 9 20332375 20335339 Lan4g0173 4 2829235 2833591 PCT