Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0155 ATGCTTGGGGTTGAAACCATGGAATTGGAAACTATGTATCCATCTTGTTTTATGTTAAGTTCAAATGGATTTGTCCAAGAGAGTCACAACACAGAATGGACTAAAGAAGAGAATAAGAATTTTGAAAGTGCCCTTGCCATATATGATAAGGACACCCCGGACCGGTGGCTGAAGGTGGCAGCCACTATCCCTGGGAAGACTGTGTTTGATGTGATCAAGCAATATAGGGAATTGGAAGAAGATGTTAGTGAAATAGAAGAAGGGCATGTTCCGGTTCCGGGATATCTTGAATCTTCTTTCATGTTTGAGTTGGTTGAGAATCATAGTTATGATGCATGCAGAAAGAGGGCTGCAACAACTGTGAAGGGTTCTGATCAGGAGAGAAAGAAAGGAGTCCCTTGGACAGAGGAGGAACACAAACGTTTTCTGATGGGACTTCTAAAGTATGGAAAGGGGGACTGGAGAAATATCTCCCGCAATTTCGTTTTCACGAAAACACCAACACAAGTGGCAAGCCATGCTCAAAAGTACTACATAAGGCAAAATGTTTCTGGAGGGAAAGAGAATAAAAGGAGACCAAGTATCCATGACATAACAATTGTTAATCTAGCAGAAACTACATCACTGGATAAGGACATACCCCTTGTATCCAATGACTCTCACCTGCCTTCGCCGCAGCCGAAACTGAGTAGCATGCAAAAAGCACAACTGGAATGGATTAATAACCAATATGATGAGTCAAACATGGTTTCCAACCCAAATTGTGAGGATATGTTCATGCCATCTTCATCTGTTATCACTTCCAAGATCCTGAAATTGCAAGGGCAGGATATCTATGACTGTGCTTTCCATGAGGTTCATGCCAAGCAAAAAATTCCAGGTTTAAGGACTGATTCTAGAAGCATCAATAAGGAAGCTATTTTCGGTATTCATGCACTGTAA 942 0.4151 MLGVETMELETMYPSCFMLSSNGFVQESHNTEWTKEENKNFESALAIYDKDTPDRWLKVAATIPGKTVFDVIKQYRELEEDVSEIEEGHVPVPGYLESSFMFELVENHSYDACRKRAATTVKGSDQERKKGVPWTEEEHKRFLMGLLKYGKGDWRNISRNFVFTKTPTQVASHAQKYYIRQNVSGGKENKRRPSIHDITIVNLAETTSLDKDIPLVSNDSHLPSPQPKLSSMQKAQLEWINNQYDESNMVSNPNCEDMFMPSSSVITSKILKLQGQDIYDCAFHEVHAKQKIPGLRTDSRSINKEAIFGIHAL* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0155 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 9 293 IPR043363 -
Lan4g0155 313 SMART sant 130 180 IPR001005 -
Lan4g0155 313 SMART sant 29 81 IPR001005 -
Lan4g0155 313 Gene3D - 25 92 - -
Lan4g0155 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Lan4g0155 313 Gene3D - 132 183 - -
Lan4g0155 313 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 9 293 - -
Lan4g0155 313 CDD SANT 32 78 IPR001005 -
Lan4g0155 313 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Lan4g0155 313 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Lan4g0155 313 Pfam Myb-like DNA-binding domain 133 177 IPR001005 -
Lan4g0155 313 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Lan4g0155 313 CDD SANT 133 177 IPR001005 -
Lan4g0155 313 SUPERFAMILY Homeodomain-like 128 182 IPR009057 -
Lan4g0155 313 SUPERFAMILY Homeodomain-like 31 86 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0155 Lan-Chr4 2505871 2508199 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan4g0155 Myb_DNA-binding 4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0155 - - gmx:778039 448.743
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0155 4 2505871 2508199 Lan2g1125 2 22520806 22523534 PCT
Lan4g0155 4 2505871 2508199 Lan9g1319 9 20433278 20435142 PCT
Lan2g1125 2 22520806 22523534 Lan4g0155 4 2505871 2508199 PCT
Lan9g1319 9 20433278 20435142 Lan4g0155 4 2505871 2508199 PCT