Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0149 ATGGAAGAGGGCATGTCAGGCTTTTGTATTAGAGATGGAAGTGTCCGTGGTAACAGTGGCAGTACTGGCACTAAGTGTGGGCGTTGGAATCCAACTACTGAACAAGTTAAGCTTTTGACTGAACTATTCAGTTCTGGACTCAGAACCCCAAGCACTGATCAGATTCAAAAGATCTCTACTCAGCTGAGTTTTTATGGTAAGATTGAAAGCAAGAATGTTTTCTATTGGTTCCAGAACCATAAGGCTAGGGAAAGACAGAAACGTCGCAAGGTCTCATTTGATGATGATAAGGATGTCAATATTCGTCGAGAAAATTCCATGAATTTTTCTACACAAAATTTTGCATATCAAGTTTCAGAGCCTGAGAGCGTGATTGAGACTCTTCAACTCTTCCCTTTGGACTCCTTTGGTGAATCAGAGTCAGAGAAGCTGAGAGTGCATTCAAATGAATGTTGGGATACTAAGATGTTTTCATACACAATGGGGGAACAAATGAATCACCCACCACTAGATCTTCGCTTGAGTTTTATGTCAACATAA 540 0.4056 MEEGMSGFCIRDGSVRGNSGSTGTKCGRWNPTTEQVKLLTELFSSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQKRRKVSFDDDKDVNIRRENSMNFSTQNFAYQVSEPESVIETLQLFPLDSFGESESEKLRVHSNECWDTKMFSYTMGEQMNHPPLDLRLSFMST* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0149 179 CDD homeodomain 28 88 IPR001356 GO:0003677
Lan4g0149 179 SMART HOX_1 24 91 IPR001356 GO:0003677
Lan4g0149 179 PANTHER WUSCHEL-RELATED HOMEOBOX 7 1 166 - -
Lan4g0149 179 ProSiteProfiles 'Homeobox' domain profile. 22 87 IPR001356 GO:0003677
Lan4g0149 179 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 1 166 IPR044555 GO:0003700|GO:0099402
Lan4g0149 179 SUPERFAMILY Homeodomain-like 27 89 IPR009057 -
Lan4g0149 179 Gene3D - 25 93 - -
Lan4g0149 179 Pfam Homeodomain 26 86 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0149 Lan-Chr4 2362321 2363708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0149 8 177 Wox Gene Family AT3G11260 56.383 9.67e-61 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lan4g0149 Homeodomain 8.9e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0149 - - pvu:PHAVU_008G226100g 281.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0149 4 2362321 2363708 Lan16g0689 16 9278268 9279601 LSH
Lan4g0149 4 2362321 2363708 Lan2g1132 2 22581906 22583218 PCT
Lan2g1132 2 22581906 22583218 Lan4g0149 4 2362321 2363708 PCT