Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0146 ATGGAGGGGAAGGAGCAAGATGTTTCATTGGGAGCAAACAAGTTCCCAGAAACGCAACCCATTGGTATAGCAGCTCAAAGCCAAGACGATGGGAAGGACTATAAGGAGCCACCACCTGCTCCTTTGTTTGAGCCATATGAACTAATATCTTGGTCTTTCTATAGAGCTGGGATAGCAGAATTCGTGGCCAGTTTTCTCTTCCTTTATATCACTGTTTTGACTGTAATAGGTGTTAATAGATCACCTTCTAAGTGCCAATCTGTTGGTATTCAAGGCATTGCTTGGGCTTTTGGTGGTATGATATTTGCCCTTGTTTACTGTACCGCTGGAATCTCTGGAGGTCACATAAACCCAGCTGTGACATTTGGGTTGTTTTTGGCAAGAAAGTTGTCTTTGACAAGGGCACTGTTCTACATAGTGATGCAGGTGTTGGGTGCTATATGTGGCGCTGGTGTGGTAAAAGGTTTTGAAGGGAAAACTAGGTACGGTCAATTCCACGGTGGAGCCAATTTCGTTGCTCCTGGTTACACCAAAGGGGATGGTCTTGGTGCTGAGATTGTTGGCACCTTTGTTCTTGTCTACACCGTTTTCTCAGCCACCGATGCCAAGCGTAATGCTAGAGACTCTCACGTTCCTATTTTAGCACCCTTGCCAATTGGGTTTGCTGTATTTTTGGTGCACTTGGCTACCATCCCAATCACAGGAACTGGTATCAACCCCGCTCGTAGTCTCGGTGCTGCCATCATCTACAACAAAGACCTTGGCTGGAATGACCACTGGATTTTCTGGGTGGGACCATTCATTGGAGCAGCTCTTGCGGCTCTTTACCACCAAGTTGTAATCAGGGCCATTCCCTTCAAATCCAAGTGA 870 0.4644 MEGKEQDVSLGANKFPETQPIGIAAQSQDDGKDYKEPPPAPLFEPYELISWSFYRAGIAEFVASFLFLYITVLTVIGVNRSPSKCQSVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRALFYIVMQVLGAICGAGVVKGFEGKTRYGQFHGGANFVAPGYTKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKDLGWNDHWIFWVGPFIGAALAALYHQVVIRAIPFKSK* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0146 289 TIGRFAM MIP: MIP family channel proteins 59 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 Pfam Major intrinsic protein 48 277 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 ProSitePatterns MIP family signature. 115 123 IPR022357 -
Lan4g0146 289 CDD MIP 55 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 Gene3D Glycerol uptake facilitator protein. 40 288 IPR023271 -
Lan4g0146 289 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PRINTS Major intrinsic protein family signature 97 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PRINTS Major intrinsic protein family signature 134 153 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PRINTS Major intrinsic protein family signature 184 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PRINTS Major intrinsic protein family signature 220 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PRINTS Major intrinsic protein family signature 260 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan4g0146 289 PANTHER MAJOR INTRINSIC PROTEIN, AQUAPORIN-LIKE PROTEIN-RELATED 1 289 - -
Lan4g0146 289 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 289 IPR034294 -
Lan4g0146 289 SUPERFAMILY Aquaporin-like 46 282 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0146 Lan-Chr4 2322849 2325249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0146 1 289 Major Intrinsic Protein MIP AT4G23400 86.159 2.64e-170 471
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0146 K09872 - gmx:100791447 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0146 4 2322849 2325249 Lan2g1133 2 22593982 22605379 PCT
Lan4g0146 4 2322849 2325249 Lan11g0251 11 1611080 1612775 PCT
Lan4g0146 4 2322849 2325249 Lan9g1324 9 20482511 20484217 PCT
Lan2g1133 2 22593982 22605379 Lan4g0146 4 2322849 2325249 PCT
Lan11g0251 11 1611080 1612775 Lan4g0146 4 2322849 2325249 PCT
Lan9g1324 9 20482511 20484217 Lan4g0146 4 2322849 2325249 PCT