Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0115 ATGCAGTGGGACAGCGATTCCGATCTCAGCGCCGACGAAGACGACACCGCGTCGTTCATCTTCAACCGCGACCTAAACGATGTTGATGGACCTCTTCCTATTCCTTTCCCTCTCCAAACGGCGCCGTATGCGTTCGTTGTTACCGACGCCATCGATCCCGATCACCCTATCATTTACGTCAACACCGTCTTCGAGATGCTCACTGGATACCTTGCCGAGGAAGTACTCGGTCGGAACTGCCGTTTCTTGCAGTGTCGAGGTCCATTTGCTAAGAGAAGGCATCCATTGGTGGACTCAACAGTAATTTCTGAAATTCGAAGATGCCTCGAGGAAGGGATTGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTTATGAACAGATTGCGACTGACACCTATATTCGGAGATGATGAGATTACTCATGTCATTGGAATCCAGTTCTTCACAGAGGCAAACATTGATCTTGGTCCTGTTCCAGGTTCTGTAATTAAGGAATCTGTTAAATCATCAGATCGGTTTCGTTCTGTGCTTTCCTCGTTACATCCTCTTCCAGTAGGGGACCGCAATGTGACTCGTGGAGTTTGTGGGATATTTCAAATGAGTGACGAGGTAATTTCTCTCAAGATACTTGCTCGCTTAACTCCAAGAGATATTGCATCTGTTGGTTCTGTCTGTAGGCGATTGTATGAGCTAACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCTGGTGCAAGGAGACTTGGATGGGGTCGGCTTGCAAGGGAACTGACCACTCTTGAAGCAGCAGCTTGGGGCAAACTGACTGTTGGAGGAGCTGTTGAACCCTCTCGCTGTAACTTTAGTGCTTGTGCTGTTGGTAATAGAGTTGTCCTATTTGGTGGGGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACATGTCCAGGTGAGCTCTCCTCCTCCTGGTCGTTGGGGCCACACACTTTCGTGTGTTAATGGTTCTCATTTGGTTCTATTTGGAGGCTGTGGAACACAAGGCTTGCTCAATGATGTGTTTGTTCTTGACCTGGATGCACAGCCTGCAACTTGGCGTGAAATTTCTGGATTGGCACCTCCACTTCCAAGATCATGGCATAGCTCCTGTACTCTCGATGGTACTAAGTTGATAGTATCTGGTGGCTGTGCCGATTCTGGAGTACTCTTGAGTGATACTTTCCTCCTTGATTTGTCAATGGAGAAACCTATCTGGAGAGAGATACCAGCCGCATGGACTCCACCTTCTCGCCTGGGTCACACCCTTTCTGTTTATGGTGGTAGGAAAATACTGATGTTTGGGGGCCTGGCCAAGAGTGGACCTCTGCGTTTTCGTTCCAGTGATGTATTCATGATGGATTTAAGTGAGGAGGAACCATGCTGGAGATGTGTAACAGGGAGTGGAATGCCTGGTGCTGGAAATCCTGGAGGCACAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTTAGTCTTCCAGGTGGTAGAATTCTGATATTCGGCGGGTCTGTTGCAGGCCTACATTCTGCCTCCCAGCTTTACATCCTTGATCCAACTGATGAGAAACCTACATGGAGAATCCTAAATGTACCTGGGTGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTATCGTTGGAGGGACAAGAGCTATTGTATTGGGTGGTCAAACCGGGGAGGAATGGGTGCTAGGTGACCTCCATGAACTGTCGTTAGCAAGTTCTGCTATATAG 1845 0.4786 MQWDSDSDLSADEDDTASFIFNRDLNDVDGPLPIPFPLQTAPYAFVVTDAIDPDHPIIYVNTVFEMLTGYLAEEVLGRNCRFLQCRGPFAKRRHPLVDSTVISEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDEITHVIGIQFFTEANIDLGPVPGSVIKESVKSSDRFRSVLSSLHPLPVGDRNVTRGVCGIFQMSDEVISLKILARLTPRDIASVGSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWGKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTLSCVNGSHLVLFGGCGTQGLLNDVFVLDLDAQPATWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDLSMEKPIWREIPAAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFMMDLSEEEPCWRCVTGSGMPGAGNPGGTAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGCPPRFAWGHSTCIVGGTRAIVLGGQTGEEWVLGDLHELSLASSAI* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0115 614 SUPERFAMILY Kelch motif 443 609 IPR015915 GO:0005515
Lan4g0115 614 Pfam Galactose oxidase, central domain 298 348 - -
Lan4g0115 614 Pfam Kelch motif 522 569 IPR011498 GO:0005515
Lan4g0115 614 Pfam Kelch motif 455 506 IPR011498 GO:0005515
Lan4g0115 614 TIGRFAM sensory_box: PAS domain S-box protein 51 150 IPR000014 -
Lan4g0115 614 Gene3D - 284 444 IPR015915 GO:0005515
Lan4g0115 614 Gene3D - 445 614 IPR015915 GO:0005515
Lan4g0115 614 Pfam PAS domain 44 151 IPR000014 -
Lan4g0115 614 SUPERFAMILY F-box domain 194 263 IPR036047 GO:0005515
Lan4g0115 614 Pfam Galactose oxidase, central domain 362 409 - -
Lan4g0115 614 ProSiteProfiles PAS repeat profile. 50 112 IPR000014 -
Lan4g0115 614 Pfam F-box-like 210 248 IPR001810 GO:0005515
Lan4g0115 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 42 151 IPR035965 -
Lan4g0115 614 Gene3D PAS domain 34 162 - -
Lan4g0115 614 Gene3D - 202 283 - -
Lan4g0115 614 CDD PAS 50 143 IPR000014 -
Lan4g0115 614 PANTHER ADAGIO PROTEIN 1-LIKE 1 613 - -
Lan4g0115 614 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 1 613 - -
Lan4g0115 614 SUPERFAMILY Kelch motif 289 502 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0115 Lan-Chr4 1742341 1749724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0115 27 245 AGC Kinase Gene Family AT5G58140 25.000 3.59e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0115 K12115 - gmx:100301887 1128.24