Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0103 ATGGGTGGTCATAGCATCAGAAACCTCCAGCTAACTCCTCTCTCCGCCGTCGCCACCGCCGTTGACTCCGGCGACCTTGAGGATGTGCGCTTATTGGACTCGTACGACACCGACGATGTCTCCGATTCCAAAATTGACGAAGGAATGAAACGGATTCAGGTTGAGGTAACTGGTATGACTTGTGCTGCTTGCTCCAATTCCGTTGAATCAGCTCTTAAATCTGTTAACGGCGTTCTCACCGCTTCCGTTGCTCTTCTTCAGAACAAAGCCGACGTCGTTTTCGATCCCACTCTTATCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGAAATATTACACGAACCCAGCACACTTGTAAAGATGCCGCATGGAACGCTGGTGGGACAGTTCACAATTGGTGGTATGACATGTGCAGCCTGCGTAAATTCTGTTGAAGGTATTCTGAGAAACCTTCCAGGAGTCAAAAGGGCTGTAGTAGCTTTGTCTACTTCGTTAGGCGAAGTTGAATATGATCCTAGTGTAACTAGTAAAGATGATATAGTTAATGCAATTGAAGATGCTGGTTTTGAAGGTTCATTTGTACAGAGCAGTGAACAGGATAAAATTACTTTAGGTGTTGTTGGTGTGTACAGTCTGATTGACAGACAAGTTTTAGAGGGCATGCTTAGCAGCATGAAAGGAGTAAGGCAGTTTCGCTTTGACCATATATCAAGTGCATTAGATGTTATGTTTGATCCTGAAGTTCTCAGTTCTAGATCCTTAGTTGATGGGATCCATGGGGGAAGCAATGGAATGTTTAAATTACATGTCAGAAACCCTTACACAAGGATGGCTTCTAAAGATGTTGGAGAGACGTCAACTGTGTTTCGGCTCTTTATCTCCAGCCTGTTTCTTAGTATTCCTCTATTCTTCATGCGGGCAGTTTGTCCTCACATACCAATGCTGTATTCCTTGTTACTTTGGAGATGTGGGCCTTTCCTCATCGATGATTGGTTGAAGTGGGCATTGGTGAGTTTCATTCAATTTGGGGTTGGGAAGCGCTTCTACATAGCAGCTGGCAGAGCTCTTAGAAATGGTTCTACAAATATGGATGTCCTGGTTGCTGTTGGAACTACTGTCTCTTACATATATTCTGTTTGTGCTCTTCTATATGGCGCACTTACTGGATTTTGGTCTCCAACATACTTCGAAACAAGTGCTATGCTCATAACATTTGTTTTGTTGGGCAAGTATTTAGAATGCCTTGCCAAGGGAAAGACATCTGATGCCATCAAGAAGTTGGTAGAACTTGCTCCTGCCACAGCAATATTGGTTGTCAAAGATAAAGGTGGTAGATCTATTGCAGAAAGGGAAATTGATTCTTTGCTCATTCAACCTGGTGACACATTAAAAGTTATTCCGGGTACAAAGATCCCTGCTGATGGTGTCGTTACTTGGGGTTCAAGTTATGTAAATGAGAGCATGGTAACTGGCGAATCTGTACCTGTTTTGAAGGAGGTGAATGCATCCGTTATTGGAGGTACAATAAACTTGCATGGCGCCCTTCACATCCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAATTTGGTTGAGACTGCGCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACAGTTGTTTCTTTGGCATTATTGACATTATTATGTTGGTATATTGCTGGGTCTATTGGAGCTTACCCAGAAGAATGGCTTCCAGAAAATGGGAATCACTTTGTTTTTGCCCTCATGTTCTCAATATCTGTAGTGGTGATTTCATGTCCCTGTGCACTTGGCTTGGCAACACCAACGGCTGTCATGGTGGCAACAGGTGTTGGGGCTAAGAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGTTGAAGTATGTAATATTTGATAAAACAGGAACTCTAACTCAGGGAAAAGCCACAGTTACTACTGCTAAGGTATTCACAGGAATGGAACGTGGAGAGTTTCTTACATTGGTGGCTTCTGCAGAGGCTAGTAGTGAACACCCACTGGCAAAAGCAATATTAGAATATGCACGCCATTTTCATTTCTTTGATGACTCCTCTGTTACTACTGATACTCAAAACATTGCCAAGGAGTTGAAGTCTGGGTGGCTTTTTGATGCGTCAGACTTCTCTGCTCTTCCAGGAAGAGGTGTACAATGCTTTATAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGCTAATTGTGGAAAATGGCCTAGATATTTCAACTGAAGTTGAAAATTTTGTGGTAGATCTGGAAGAAAGAGCAGAGACAGGGATACTGGTCGCGTATGATGATATATTAATTGGAGTCTTAGGGGTTGCAGACCCACTAAAAAGAGAAGTTTCTGTTGTTATCGAGGGACTCCAGAAAATGGGTATCATGCCTGTTATGGTTACAGGAGATAACTGGAGAACAGCTCGAGCTGTTGCCAAGGAGGTTGGCATTCAAGATGTTAGAGCAGAGGTTCTGCCATCAGGAAAGGCAGATGTTGTTCGATCGTTTCAGAATGATGGCAGCATAGTTGCAATGGTAGGTGACGGTATCAATGACTCTCCTGCATTAGCTGCTGCTGATGTTGGTATAGCAATTGGGGCTGGGACAGATATTGCAATAGAAGCTGCTGATTATGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATTGACCTTTCCCGGAAGACCTTTTCTCGTATTCGGCTGAATTACGTGTTTGCAATGGCCTACAATGCTGTTGCTATACCAGTTGCTGCTGGGGTTTTTTATCCTTCACTGGGGATCAAGCTGCCACCATGGGTTGCTGGTGCGTGCATGGCTCTCTCTTCTGTAAGTGTAGTATGTTCTTCTTTGCTTCTCAGAAGGTATAGAAAACCCAGACTTACTACAATACTTGAAGTAGTTGTAGAATAA 3006 0.4301 MGGHSIRNLQLTPLSAVATAVDSGDLEDVRLLDSYDTDDVSDSKIDEGMKRIQVEVTGMTCAACSNSVESALKSVNGVLTASVALLQNKADVVFDPTLIKDEDIKNAIEDAGFEAEILHEPSTLVKMPHGTLVGQFTIGGMTCAACVNSVEGILRNLPGVKRAVVALSTSLGEVEYDPSVTSKDDIVNAIEDAGFEGSFVQSSEQDKITLGVVGVYSLIDRQVLEGMLSSMKGVRQFRFDHISSALDVMFDPEVLSSRSLVDGIHGGSNGMFKLHVRNPYTRMASKDVGETSTVFRLFISSLFLSIPLFFMRAVCPHIPMLYSLLLWRCGPFLIDDWLKWALVSFIQFGVGKRFYIAAGRALRNGSTNMDVLVAVGTTVSYIYSVCALLYGALTGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELAPATAILVVKDKGGRSIAEREIDSLLIQPGDTLKVIPGTKIPADGVVTWGSSYVNESMVTGESVPVLKEVNASVIGGTINLHGALHIQATKVGSDTVLSQIINLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLCWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVISCPCALGLATPTAVMVATGVGAKNGVLIKGGDALERAQMLKYVIFDKTGTLTQGKATVTTAKVFTGMERGEFLTLVASAEASSEHPLAKAILEYARHFHFFDDSSVTTDTQNIAKELKSGWLFDASDFSALPGRGVQCFIDGKRILVGNRKLIVENGLDISTEVENFVVDLEERAETGILVAYDDILIGVLGVADPLKREVSVVIEGLQKMGIMPVMVTGDNWRTARAVAKEVGIQDVRAEVLPSGKADVVRSFQNDGSIVAMVGDGINDSPALAAADVGIAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNAVAIPVAAGVFYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRKPRLTTILEVVVE* 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0103 1001 SUPERFAMILY HMA, heavy metal-associated domain 128 203 IPR036163 GO:0046872
Lan4g0103 1001 CDD HMA 135 196 IPR006121 GO:0046872
Lan4g0103 1001 Pfam E1-E2 ATPase 446 635 - -
Lan4g0103 1001 PANTHER HEAVY METAL P-TYPE ATPASE 17 994 - -
Lan4g0103 1001 ProSitePatterns Heavy-metal-associated domain. 138 168 IPR017969 GO:0046872
Lan4g0103 1001 Pfam haloacid dehalogenase-like hydrolase 652 889 - -
Lan4g0103 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 748 957 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan4g0103 1001 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 408 677 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan4g0103 1001 Gene3D - 662 754 IPR023299 GO:0000166
Lan4g0103 1001 Gene3D - 755 806 IPR023299 GO:0000166
Lan4g0103 1001 Gene3D - 423 545 - -
Lan4g0103 1001 Pfam Heavy-metal-associated domain 136 196 IPR006121 GO:0046872
Lan4g0103 1001 Pfam Heavy-metal-associated domain 54 114 IPR006121 GO:0046872
Lan4g0103 1001 ProSitePatterns Heavy-metal-associated domain. 56 86 IPR017969 GO:0046872
Lan4g0103 1001 PRINTS H+-transporting ATPase (proton pump) signature 847 863 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan4g0103 1001 PRINTS H+-transporting ATPase (proton pump) signature 875 891 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan4g0103 1001 PRINTS H+-transporting ATPase (proton pump) signature 906 931 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lan4g0103 1001 ProSiteProfiles Heavy-metal-associated domain profile. 133 199 IPR006121 GO:0046872
Lan4g0103 1001 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Lan4g0103 1001 Gene3D - 49 120 - -
Lan4g0103 1001 SFLD C1.7: P-type atpase like 637 927 - -
Lan4g0103 1001 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 369 984 IPR027256 GO:0006812|GO:0016021|GO:0019829
Lan4g0103 1001 Gene3D - 622 932 IPR023214 -
Lan4g0103 1001 SUPERFAMILY HAD-like 654 981 IPR036412 -
Lan4g0103 1001 CDD HMA 53 116 IPR006121 GO:0046872
Lan4g0103 1001 SUPERFAMILY Calcium ATPase, transduction domain A 455 541 IPR008250 -
Lan4g0103 1001 SFLD p-type atpase 637 927 IPR044492 -
Lan4g0103 1001 ProSiteProfiles Heavy-metal-associated domain profile. 51 117 IPR006121 GO:0046872
Lan4g0103 1001 SUPERFAMILY HMA, heavy metal-associated domain 46 121 IPR036163 GO:0046872
Lan4g0103 1001 Gene3D - 134 199 - -
Lan4g0103 1001 SUPERFAMILY Calcium ATPase, transmembrane domain M 388 949 IPR023298 -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 800 811 - -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 822 832 - -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 875 894 - -
Lan4g0103 1001 PRINTS P-type cation-transporting ATPase superfamily signature 898 910 - -
Lan4g0103 1001 CDD P-type_ATPase_Cu-like 296 971 - -
Lan4g0103 1001 TIGRFAM TIGR00003: copper ion binding protein 135 196 IPR006122 GO:0005507
Lan4g0103 1001 TIGRFAM TIGR00003: copper ion binding protein 52 115 IPR006122 GO:0005507
Lan4g0103 1001 PANTHER ATP7, ISOFORM B 17 994 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0103 Lan-Chr4 1492392 1500342 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0103 5 1001 Primary Pumps ATPases AT5G44790 74.652 0.0 1511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0103 K17686 - gmx:100804960 1639.01