Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0092 ATGGCATCTTCTACAGTTGATATCGCTTCCTCTTCACCTTTTGGTTGCGTTCTTAGGGACCGCAACCATCGGGATGGGTGTCGGGAAAGCAATGTTTTCAAAAACAGAATGAAGAATTTTGTCATCGACCACCTTAACATGTCCACTGACTCGACAACGGATGAGAACAATAACAATGCTTTCAAAGCTTCTAAGAACAATAATATTGGTAGCTTTTGTTTCACGGGAAGCAATCACAACAATAACAAGGAGAAGGATGAATATTCTCTGGCTTCGTTGGTCAGCCCAAGACACTCGCGGCTTCTCGATCGATGGGCTGCGAAACATGCCCGAGAAATGGTGTCAACATTGGAAAATGAAGCAGAGTTGTTGGCAATGCCAAATTCAAACAACAACAATGACATGCTTCAAAGGACATATAGTAATTCTAGCAATGATGATGTTTCTTCTGGAACCTCAGCTCTTGGTGCTTCATCTCTTGTTCAGATGTGGGAGATGAGGCTAAACAAACCCAATGGATCTAAATCAACCACACCAAACTCTACCAATGCATTATTGAAAGAACAAAACAGAGGAGGTTCAGAAGCAGAGGAATCCTCTGCTTCTTCTTCCACTTCTTCTTCTGATCATGAACCACCAGGAAATGAAGAACCTTTTCCTGATTGGGAATTTGATAAGATGGGAATGAGCAATCAATGTTCGCCAAAATCAAGGTTCTCTTCATTGGAGTCAGTCGAAAGCGACAGGGTTAGTGTTGCAGACATAATCAAAAGGCTCACCTCTACAAAGCAAGGTCAGAGTCCATCACATTCAACTGGTGAGGAAAATGACAATGAGGGATGGAGTAGCAGTTTGACATGTTCTCCTTCTAGAGAACGTGACTGTGGTTCCGCGCCAGACCCTTTAGAGAATAAAGCGTTTCTTCCACATATTACTTGTTTGCCAAGGATTAGAGGGCGCCAAGCATTCCATGATTTGCTTATGCAGTTAGAGCAAGACAGGTATGGGGAGCTCAAAAATCTAGCAGAGCGTGGAGCAGTTTCCAAGTTCGCACAAAGAGGTCGTATTCAGGCAGTGCTCCGGCTTAGATTGTTGCAACGTGGGGTAGCGGCTAATAATGAATCTCCCCCGAAATCAACAGCATCTGAAGTGAACAGACAACCACAAGGATCTGCAATTATGCAACTAAGGGAAAGATTTCGCACTGGGGCTGATAATAGAACTACAGGGCAGACAGAAGTAGCTGAGTCAAGAAGTCCTATACAATTTGATGCCTCTCCCACCACTAATCACCTCAGCATAAACACTTGCAGCCTGACTGTTCAAAGCACAGCTGTTCGCTCTCCAGAATCCAAGCAAAAATCAGTTTCTGAAACTACTGTAGAACATAATAAGGAAGAAGCTCGACGAAATTCAGACACCACACACCCAGAAACATGTCTTAAAGCTAAAGATAATGACTCACAAGAAATAGCCGATCGCTCTCCAGAATTCAAGCAAAAATCAGTTTCTGAAACTAGTGTAGATCATAATAAGGAAGAAGCTCGACCAAATTCAGACACCACACACCCGAAAACATGTCTTGCAGCTCAAGATAATGACTCACAAGAAATTACTGAGTCGACTCCATCCACGAATGAGTCAAATGTAAATAAGATGGAAGATAAGATAGAAACAAGCAACCAACAGTATACTATGGCTGAAACAGGTTACGACCAGACAGAAGAGGAGGAGGAAGAGACAAGTAACCAGCACTTTTCTGAACGCTGTTATGATGAGATAGCAGAAGAGGTTGAGGGTATTGGTCAGAATTATGATGAAACTAGTTATGATTGGATCAGCGAAATTTCTCGACCTAGGAGCTACTGGGAAGAACGCAGGCAAGAATGGTATAGAGAAATGCTTGACACTGAGTCTCACAATGAAGATATACGTAAGCTCCTTGAAAGAAGAACAGTGTCATCTTTCCTTTCTAGTGACTTCCGCGATAGAATGGATAGATTGATGGAGTGTCATAGGGGAACACAAACACATTTAGTCAATAGACAAGATGAAGAGGAAGACAATCAAGCGTTGATCGCAATTTTACAAGAACACTTGCATCTGGCAAGAAGTCCTCGGGAAGATGAAAGAGAGCAACCGGAGGAGAAAGAAGAGGAAGAAGTGAGGAGAAATGACGAAGACGAAGAAGAACAAAAGGAAGAGGAGCATGAGGGGGAGACCTTGATCAGTAATTCATATAATGAAGCTGGTGACTATTTTAGTCGATCCTCATCACCAACTAATATGACAACATGGAGTTACATAGACAATGAAACCGGTGATGATTTTGATAGAGTTGCATCTACATCCTCACCACCTTCTCAATCTCAGTCTTTTTGTCAGGATAGTCGGCAAAACTCTTCGTCGACTAATCATCATTCAATTGGAATGGAACTCATCTATGATTTGAGAGGTCAAATGGAGCAACTTCATCATGAGATGTCCGAGCTCAGGAAATCAATGAAGACCTGCACGGATATGCAGATGCAAGCACAACAATCCAAGAATCAAGAAGTTAACACAGTCAAAAAGGAAGAAAAGAAGTCAAATAACAAGGCCCCAATTAAAGGCAACTGCTGCATTTGCTATAACATGAAAGTGGACTCAGTTTTGTACAGGTGTGGACACATGTGTGCATGTCTGAAGTGTGCAAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTAGAGCTAAAATAGTAGATGTTGTACGAGTGTATGTTGATTTTTAA 2778 0.4201 MASSTVDIASSSPFGCVLRDRNHRDGCRESNVFKNRMKNFVIDHLNMSTDSTTDENNNNAFKASKNNNIGSFCFTGSNHNNNKEKDEYSLASLVSPRHSRLLDRWAAKHAREMVSTLENEAELLAMPNSNNNNDMLQRTYSNSSNDDVSSGTSALGASSLVQMWEMRLNKPNGSKSTTPNSTNALLKEQNRGGSEAEESSASSSTSSSDHEPPGNEEPFPDWEFDKMGMSNQCSPKSRFSSLESVESDRVSVADIIKRLTSTKQGQSPSHSTGEENDNEGWSSSLTCSPSRERDCGSAPDPLENKAFLPHITCLPRIRGRQAFHDLLMQLEQDRYGELKNLAERGAVSKFAQRGRIQAVLRLRLLQRGVAANNESPPKSTASEVNRQPQGSAIMQLRERFRTGADNRTTGQTEVAESRSPIQFDASPTTNHLSINTCSLTVQSTAVRSPESKQKSVSETTVEHNKEEARRNSDTTHPETCLKAKDNDSQEIADRSPEFKQKSVSETSVDHNKEEARPNSDTTHPKTCLAAQDNDSQEITESTPSTNESNVNKMEDKIETSNQQYTMAETGYDQTEEEEEETSNQHFSERCYDEIAEEVEGIGQNYDETSYDWISEISRPRSYWEERRQEWYREMLDTESHNEDIRKLLERRTVSSFLSSDFRDRMDRLMECHRGTQTHLVNRQDEEEDNQALIAILQEHLHLARSPREDEREQPEEKEEEEVRRNDEDEEEQKEEEHEGETLISNSYNEAGDYFSRSSSPTNMTTWSYIDNETGDDFDRVASTSSPPSQSQSFCQDSRQNSSSTNHHSIGMELIYDLRGQMEQLHHEMSELRKSMKTCTDMQMQAQQSKNQEVNTVKKEEKKSNNKAPIKGNCCICYNMKVDSVLYRCGHMCACLKCANELQWNSGKCPICRAKIVDVVRVYVDF* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0092 925 MobiDBLite consensus disorder prediction 259 291 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 405 455 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 721 736 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 456 520 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 701 807 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 169 245 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 701 720 - -
Lan4g0092 925 ProSiteProfiles Zinc finger RING-type profile. 873 912 IPR001841 -
Lan4g0092 925 MobiDBLite consensus disorder prediction 127 153 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 521 552 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 372 392 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 743 771 - -
Lan4g0092 925 SUPERFAMILY RING/U-box 855 917 - -
Lan4g0092 925 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 844 924 IPR013083 -
Lan4g0092 925 MobiDBLite consensus disorder prediction 259 302 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 778 807 - -
Lan4g0092 925 PANTHER BNAC05G24000D PROTEIN 1 924 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 230 245 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 371 552 - -
Lan4g0092 925 MobiDBLite consensus disorder prediction 169 212 - -
Lan4g0092 925 Coils Coil 715 738 - -
Lan4g0092 925 PANTHER BNAC05G24000D PROTEIN 1 924 - -
Lan4g0092 925 Pfam Zinc finger, C3HC4 type (RING finger) 871 917 - -
Lan4g0092 925 CDD mRING-HC-C3HC5_NEU1 872 912 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0092 Lan-Chr4 1291332 1296286 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0092 873 921 C3H Transcription Factor Family AT3G06140 40.816 1.08e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0092 - - ccaj:109812885 866.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0092 4 1291332 1296286 Lan19g0847 19 15298805 15303399 LSH