Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0080 ATGCAGAACGAAGAAGGACAAATCACTGAGCTTTACATTCCTAGGAAGTGTTCTGCCACAAACAGATTGATAACCTCAAAGGACCATGCTTCTGTTCAAATCAATGTTGGTCATTTGGATGAGAGTGGTGTTTACAATGGAAATTTCTCCACTTTTGCTCTCTCTGGTTACATTCGTGCCCAGGGTGATGCTGACAGTGCACTAGATCGCTTGTGGACAAAGAAGAAAGTTGAAGTTAAGCAGCAATAG 249 0.4217 MQNEEGQITELYIPRKCSATNRLITSKDHASVQINVGHLDESGVYNGNFSTFALSGYIRAQGDADSALDRLWTKKKVEVKQQ* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0080 82 Pfam Ribosomal protein S21e 1 77 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lan4g0080 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 - -
Lan4g0080 82 PANTHER 40S RIBOSOMAL PROTEIN S21 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
Lan4g0080 82 ProSitePatterns Ribosomal protein S21e signature. 11 19 IPR018279 GO:0003735|GO:0005840|GO:0006412
Lan4g0080 82 Gene3D - 1 81 IPR038579 -
Lan4g0080 82 PIRSF RPS21e 1 82 IPR001931 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0080 Lan-Chr4 1056985 1058235 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0080 1 81 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 80.247 4.45e-49 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0080 K02971 - gmx:100817753 155.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0080 4 1056985 1058235 Lan16g1174 16 19114131 19116705 LSH