Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0064 ATGACAAACTCATTCTCTGATCTCTTTGCTTCACCCTCTGAAAGGCCATCGGGGTTTTCAGGTGAAGCTGGGATGAGTGCGCCAAAATTCATGTCCATACCACCTCCTTCTTTCCCTATGTCTCCACCACTCATTTCTCCTTCTTCTTACTTTGATGAGCTTCTCGACTCTCCTGTTCTCCTGAACTCTTCCAACATTTTCTCATCAACAACTGCTGCACTTGCTGCCCAAGGCTTCAATTGGAATAATATAAAAGAAGACAAATGCTTCTCAAGTATTTCATTCCCTACTCAGCCAAAGCCTCCCCCTCAATCTTCAAACTTTACAAATCAAACTCAACAAGCATGGAGTTTTCAGGAATCAACTAAGTTAGAGAGTCTAGTGAAAACTGAATACTCTTCTTCTATGCAGAATTTCACTGCTAAGAATGCTAATGCCCAAAGTAACAACAACAATAATAATAATTTCCAACCTCAGATCTTAAACAGAAGATCAGATGATGGGTACAATTGGAGAAAATATGGGCAAAAACAAGTGAAAGGGACTGCAAATCCAAGAAGTTATTACAAATGCACATACCCTAATTGTCCAACAAAGAAAAAGGTTGAGAGGGCTTTAGATGGACAAATTACTGAGATAGTTTACAAAGATAATCATAACCATCCTAAGCCACAAGCTACTAAGAGGAACTCATCTTCTCTTCCTATTCCTCCTTCAAATCATGTCATCACTGAGATACTGGATCAATCATATGCATCAAATGGCAGTAGACAAATGGATTTGTTGGCCACCACTGAGAACTCATTGATATCAATGGGAGATGATGATTATGAGCAAAGCTCTCAGAAGAGTAGATTAGAAGCTGATGAAGATGAACCTGATGCCAAAAGATGGAGAATAGAAGGTGAAAATGCGAGTATATCAGCACCTGGAAGTAGAACAGTGAGAGAGCCCAGAGTTGTAGTTCACACAACCAGTGACATTGATATTCTAGATGATGGGTATAGGTGGAGGAAATACGGGCAGAAAGTAGTCAAGGGAAATACAAATCCAAGGAGTTACTACAAGTGCACATACCCAGGATGTCCAGTGAGGAAGCATATAGAAAGGGACCCACAAGATCTAAGTGCAGTGATCACAACCTATGAGGGAAAGCATAACCATGCTGTCCCTGCAGCACGTGGCAGTGGCAACCATTCCATAAACAAAAACAACACTGCAGTTCCTGCCATAAGTCCCTATGCTGTTACTGAATACCCTAACAATTCCCTCAACAATTCTATTCAAAATTTTAGACCACAAGAAGGGCAATCACACTTCAACCAAGGGATGCTGAAGAGTCATGGAAGTTTTGGATTCTTTGGGTTTGGAAACTCAATGGGGTCTTACATGAATCAGCAATCTGACAATGTCTTTTCTTCAAGAGCTAAGGAGGAGCCTAGAGATGACTCATTTCTTGATTCTTTGCTATCCTAG 1476 0.4072 MTNSFSDLFASPSERPSGFSGEAGMSAPKFMSIPPPSFPMSPPLISPSSYFDELLDSPVLLNSSNIFSSTTAALAAQGFNWNNIKEDKCFSSISFPTQPKPPPQSSNFTNQTQQAWSFQESTKLESLVKTEYSSSMQNFTAKNANAQSNNNNNNNFQPQILNRRSDDGYNWRKYGQKQVKGTANPRSYYKCTYPNCPTKKKVERALDGQITEIVYKDNHNHPKPQATKRNSSSLPIPPSNHVITEILDQSYASNGSRQMDLLATTENSLISMGDDDYEQSSQKSRLEADEDEPDAKRWRIEGENASISAPGSRTVREPRVVVHTTSDIDILDDGYRWRKYGQKVVKGNTNPRSYYKCTYPGCPVRKHIERDPQDLSAVITTYEGKHNHAVPAARGSGNHSINKNNTAVPAISPYAVTEYPNNSLNNSIQNFRPQEGQSHFNQGMLKSHGSFGFFGFGNSMGSYMNQQSDNVFSSRAKEEPRDDSFLDSLLS* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0064 491 MobiDBLite consensus disorder prediction 278 297 - -
Lan4g0064 491 SUPERFAMILY WRKY DNA-binding domain 164 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 ProSiteProfiles WRKY domain profile. 326 391 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 MobiDBLite consensus disorder prediction 272 297 - -
Lan4g0064 491 MobiDBLite consensus disorder prediction 215 239 - -
Lan4g0064 491 PANTHER WRKY TRANSCRIPTION FACTOR WRKY24-LIKE 16 469 - -
Lan4g0064 491 SUPERFAMILY WRKY DNA-binding domain 323 391 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 MobiDBLite consensus disorder prediction 1 23 - -
Lan4g0064 491 ProSiteProfiles WRKY domain profile. 166 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 Gene3D WRKY domain 150 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 Gene3D WRKY domain 318 384 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 MobiDBLite consensus disorder prediction 471 491 - -
Lan4g0064 491 Pfam WRKY DNA -binding domain 332 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 Pfam WRKY DNA -binding domain 166 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 MobiDBLite consensus disorder prediction 144 169 - -
Lan4g0064 491 MobiDBLite consensus disorder prediction 144 164 - -
Lan4g0064 491 SMART WRKY_cls 331 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 SMART WRKY_cls 165 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan4g0064 491 MobiDBLite consensus disorder prediction 225 239 - -
Lan4g0064 491 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 469 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0064 Lan-Chr4 841540 846019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0064 25 490 WRKY Transcription Factor Family AT2G38470 45.233 1.78e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan4g0064 WRKY 7e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0064 K13424 - gmx:100127385 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0064 4 841540 846019 Lan2g1031 2 21360251 21363912 LSH
Lan4g0064 4 841540 846019 Lan9g1229 9 19574023 19576986 LSH
Lan4g0064 4 841540 846019 Lan2g1031 2 21360251 21363912 PCT
Lan4g0064 4 841540 846019 Lan11g0370 11 2674289 2677742 PCT
Lan4g0064 4 841540 846019 Lan9g1229 9 19574023 19576986 PCT
Lan2g1031 2 21360251 21363912 Lan4g0064 4 841540 846019 PCT
Lan11g0370 11 2674289 2677742 Lan4g0064 4 841540 846019 PCT
Lan9g1229 9 19574023 19576986 Lan4g0064 4 841540 846019 PCT