Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0042 ATGAAGAAAATGTGTAAGATAAAGAAAAGGGTTTTGATGTTATGGTTGTTTGGAATAACTATGCAGCTAGTCTTCCATGGTGGCTGTTCTGAGAATACACCATTTAGGAGGAACTTGAGGGAAAACAATAGCCAGGAACCACCAATTCATAATTATGCAGTGAAGCTGAATAATGAAAGCAATCATAAGTTGGTGGTTGATAATGGCATAGTTTCTGTTACTTTATCAAACCCTGAAGGCTACGTGACTGGAATATCATATAATGGAATTGATAATATACTTGAAGCTCAAAATGAAGAACAAGATAGAGGGTACTTGGACGTAGTTTGGAATGAACCCGGAAAACCATATTCGTTTCAGAGAATCCATGGTACAAAGTTTTCGGTAATAACAGCTGAGAAGAATCTGGTTGAGCTTTCATTTTTAAGAACATGGGAAACTTCAATGAATGACACAAATGTCCCTATACACATAGATACAAGGTACATTTTTCGAGGAGGTGATTCTGGATTTTACTCATATGCGATATTTGATCGTCCAAAAGGATTACCATCAACGGAGGTTGTTCAAATTAGGATTGTTTTCAAGCTCGAGAAAAACAGGTTCAACTACATGGCTATAGAAGATAACATGCAAAGAAGAATGCCAACAATGAGAGATAGAGAAACAGGCCAAGCCCTAGTATATCCTGAAGCAGTTCTATTAACTAATCCAAGTAACCCACAATTTAGAGGAGAGGTTGATGACAAATACCAATACTCAATTGAGAATAAAGATAACAGAGTACATGGTTGGATTAATATTGATTCTGATTCACCAATAGGTTTTTGGATGATAACACCAAGTAATGAGTTCAGGAATGGTGGACCCAATAAACTAGATCTCACTTCTCATACGGGTCCCATCACCCTAAATATGTTTGTGAGTACCCACTATGCTGGCAATGAAGTAACTTTGTTATTTGAAGAAGGGGAGACATATAAAAAGGTTTTTGGTCCTGTTTTTATTTATCTTAATTCTGCTACAACTAAAGATAATTCATTATCCCTTTGGTCAGATGCTGTAAATCAGCTATCAAAGGAAGTCAAAAGCTGGCCTTATGATTTTCCTAGATCACAAGATTTCATTCAACCCAATGAAAGAGGAAAAGTATTGGGAAGATTACTAATCCAAGATAGATACATCAAAGGAGGTACATTACAGAATGCTAAAAATGCTTATGTTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAATTCTGGACTAAAACTGATAGAAGGGGACATTTCAAAATAAAAAATATTATACCTGGAGTTTATAATTTGTATGCATGGGTTCCTGACTTCATTGGTGATTACAAATACAATACTACAATCCTCATTGCACAAGGAGGAGTCTTAAATTTGAATAAATTGATTTATGATCCTCCAAGAAATGGACCAACTCTTTGGGAAATTGGGGTACCAGATCGCTCAGCTGCTGAATTTTATGTGCCAGATCCCTATCCTACTCTCTTGAACAAGTTATACATTGATCAACCTAAAGAGAAGTATAGGCAATACGGGCTATGGGATCGTTATGTTGATTTATATCCAAATAATGATCTAGAATACACTATTGGTGTTAACAAGTTTAAGAAGGATTGGTTTTTTGCTCATGTTACAAGAAACAAAGGAAATAATACATATGAACCAACTACATGGCAAATTATATTTGAACATCAACATGACATTTTTAGTGGAAACTATACACTACAATTGGCTTTGGCATCTGCTAAAGATTCTGAGCTACAAGTCCGGTTCAATTACCCTAGCATCAATCCACCACACTTTACAACAGGACAAATAGGTGGAGATAATTCCATTGGAAGGCATGGCTTGCATGGATTATATTGGTTATATAGCATTGATGTTCCAAGTCATCATTTTGTAAAAGGAAAGAATATTATCTATCTCACCCAAATAAGAGCCACAACTCCCTTACAAGGAGTTATGTATGACTATATTCGTTTAGAAAGACCTCACACTTAA 2055 0.3601 MKKMCKIKKRVLMLWLFGITMQLVFHGGCSENTPFRRNLRENNSQEPPIHNYAVKLNNESNHKLVVDNGIVSVTLSNPEGYVTGISYNGIDNILEAQNEEQDRGYLDVVWNEPGKPYSFQRIHGTKFSVITAEKNLVELSFLRTWETSMNDTNVPIHIDTRYIFRGGDSGFYSYAIFDRPKGLPSTEVVQIRIVFKLEKNRFNYMAIEDNMQRRMPTMRDRETGQALVYPEAVLLTNPSNPQFRGEVDDKYQYSIENKDNRVHGWINIDSDSPIGFWMITPSNEFRNGGPNKLDLTSHTGPITLNMFVSTHYAGNEVTLLFEEGETYKKVFGPVFIYLNSATTKDNSLSLWSDAVNQLSKEVKSWPYDFPRSQDFIQPNERGKVLGRLLIQDRYIKGGTLQNAKNAYVGLALPGDAGSWQRESKGYQFWTKTDRRGHFKIKNIIPGVYNLYAWVPDFIGDYKYNTTILIAQGGVLNLNKLIYDPPRNGPTLWEIGVPDRSAAEFYVPDPYPTLLNKLYIDQPKEKYRQYGLWDRYVDLYPNNDLEYTIGVNKFKKDWFFAHVTRNKGNNTYEPTTWQIIFEHQHDIFSGNYTLQLALASAKDSELQVRFNYPSINPPHFTTGQIGGDNSIGRHGLHGLYWLYSIDVPSHHFVKGKNIIYLTQIRATTPLQGVMYDYIRLERPHT* 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0042 684 SUPERFAMILY Galactose mutarotase-like 59 346 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan4g0042 684 Gene3D - 378 478 - -
Lan4g0042 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
Lan4g0042 684 Pfam Polysaccharide lyase family 4, domain II 404 473 IPR029413 -
Lan4g0042 684 Gene3D - 56 356 IPR014718 GO:0030246
Lan4g0042 684 Pfam Polysaccharide lyase family 4, domain III 490 679 IPR029411 -
Lan4g0042 684 CDD RGL4_C 492 680 - -
Lan4g0042 684 SUPERFAMILY Galactose-binding domain-like 487 680 IPR008979 -
Lan4g0042 684 Pfam Rhamnogalacturonate lyase family 52 247 IPR010325 -
Lan4g0042 684 Gene3D - 488 680 - -
Lan4g0042 684 CDD RGL4_N 59 347 - -
Lan4g0042 684 SUPERFAMILY Starch-binding domain-like 424 478 IPR013784 GO:0030246
Lan4g0042 684 CDD RGL4_M 380 480 IPR029413 -
Lan4g0042 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0042 Lan-Chr4 475143 487463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0042 54 682 Polysaccharide Lyase AT1G09890 54.905 0.0 708
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0042 K18195 - gmx:100776664 1004.97