Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0041 ATGCAGCTAGTCTTCCATGGTGGCTGTTCTGAGAATACACCATTTAGGAGAGATTTGAGCCAAAACAATAGCCAGGAACTACCAATTCATAATGAAACCAATCATAAGTTGGTGGTTGAAAATGGCATCATTTCTGTCACTTTGTCAAACCCTGAAGGCTACGTTATTGGAATATCATATAATGGAATTGATAATATTCTTGAAGTTGAAAATAAAGAACAAGATAGAGGGTATTTGAGCGTTGTTTGGAATGAACCCGGAAAATCAAGTCACTTTCAGAGCATCCATGGGACAAAATTTTCGGTAATAATAGCTGAGGAGAATCTGGTTGAGCTTTCATTTTTGAGAACATGGGAATCTTCCATGAATGGCACAAATGTCCCCATAAACGTAGATATAAGGTATATTTTCCGGGAAGGTGATTCTGGATTTTATACATATGCAATATTTAATCGCCCAAGTGGATGGCCAGCGATAGAGGTTGATCAAATTAGGATTGTTTACAGGCTCCAAAGAAGCAGTTTCAACTACATGGCTATAGATGATAAGAAGCAAAGAAGAATGGCAACAATGAGAGATAGAGGAACGGGTCAAACCCTAGCATACCCTGAAGCAGTTCTATTAACCAATCCAAGTAACCCACAATTTAGAGGAGAGGTTGATGACAAATATCAATACTCACTTGAGAACAAAGACAACAAAGTACATGGTTGGATTAGTATTGATTCTGATTCACCAATAGGTTTTTGGATGATAACACCAAGTAATGAGTTTAGGAATGGTGGACCCAATAAGCTAGACCTCACTTCTCATGTGGGTCCCATCACCCTAAGTACATTTGTTAGCACCCACTATGCTGGGAAGGAAGTAACCATGTCATTTGAAGAAGGGGAGACATATAAAAAGGTTTTTGGTCCTGTTTTTGTTTACCTTAACTCTGCTACAAATAAAGATAATTCACTCTCTCTCTGGTCAGATGCTGTGGATCAGCTATCAAAGGAAGTCAAAAGCTGGCCTTATGATTTTCCTAGATCACAAGATTTCATTCAACCCAATGAAAGAGGAAAAGTATTGGGAAGATTACTAATCCAAGATAGATACATCAAAGGAGGTACATTGCAGAATGCTAAAAATGCTTATGTTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAATTCTGGACTAGAACTGATCCAAATGGATATTTCACAATAAAAAATATTGTACCTGGAGATTATAATTTGTATGCATGGGTTCCTGGCTTCTTTGGTGATTACAAATACAATTCTACAATCCTCATTACACAAGGTGAAGTCTTGAATTTGAAAAAATTGGTTTACGATCTTCCAAGAAATGGACCAACTCTTTGGGAAATCGGGATCCCAGATCGCTCATCTCTTGAATTCTATGTGCCAGATCCCTATCCTACTCTCATGAATAAATTATACAATGATCAACCCAAAGAGAAGTTTAGGCAATATGGGCTATGGGATCGTTATGTTGATTTATATCCAAATAATGATTTAGTATACACTATTGGTGTTAACAAGTTTAATGAGGATTGGTTTTTTGCTCATGTCACAAGGAACATAGGAAATAATACATATGAACCAACTACATGGAAGATTATATTTGAACATCAACATGATATTTTTAGTGGAAACTACACATTACAATTGGCCTTGGCATCTGCTAAAGATTCTGAGCTACAGGTTCGGTTCAATGATCCTAGCATCACTCCACCACACTTTACAACAGGACAAATAGGTGAAGATAATTCCATTGCAAGGCATGGCATGCATGGATTATATTGGCCATATAGCATTAATGTTTCAAGTGATCATTTTGTGAAAGGAAAGAATATTATCTATTTGACCCAATCAAGAGCCACAAGTCCCTTTCAAGGAGTTATGTATGATTATATTCGTTTAGAAAGACCTCAAGCTTAA 1974 0.3723 MQLVFHGGCSENTPFRRDLSQNNSQELPIHNETNHKLVVENGIISVTLSNPEGYVIGISYNGIDNILEVENKEQDRGYLSVVWNEPGKSSHFQSIHGTKFSVIIAEENLVELSFLRTWESSMNGTNVPINVDIRYIFREGDSGFYTYAIFNRPSGWPAIEVDQIRIVYRLQRSSFNYMAIDDKKQRRMATMRDRGTGQTLAYPEAVLLTNPSNPQFRGEVDDKYQYSLENKDNKVHGWISIDSDSPIGFWMITPSNEFRNGGPNKLDLTSHVGPITLSTFVSTHYAGKEVTMSFEEGETYKKVFGPVFVYLNSATNKDNSLSLWSDAVDQLSKEVKSWPYDFPRSQDFIQPNERGKVLGRLLIQDRYIKGGTLQNAKNAYVGLALPGDAGSWQRESKGYQFWTRTDPNGYFTIKNIVPGDYNLYAWVPGFFGDYKYNSTILITQGEVLNLKKLVYDLPRNGPTLWEIGIPDRSSLEFYVPDPYPTLMNKLYNDQPKEKFRQYGLWDRYVDLYPNNDLVYTIGVNKFNEDWFFAHVTRNIGNNTYEPTTWKIIFEHQHDIFSGNYTLQLALASAKDSELQVRFNDPSITPPHFTTGQIGEDNSIARHGMHGLYWPYSINVSSDHFVKGKNIIYLTQSRATSPFQGVMYDYIRLERPQA* 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0041 657 Gene3D - 351 451 - -
Lan4g0041 657 CDD RGL4_M 353 453 IPR029413 -
Lan4g0041 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 31 656 - -
Lan4g0041 657 Pfam Polysaccharide lyase family 4, domain III 463 652 IPR029411 -
Lan4g0041 657 Pfam Rhamnogalacturonate lyase family 20 220 IPR010325 -
Lan4g0041 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 31 656 - -
Lan4g0041 657 CDD RGL4_N 37 320 - -
Lan4g0041 657 Gene3D - 29 329 IPR014718 GO:0030246
Lan4g0041 657 Pfam Polysaccharide lyase family 4, domain II 377 447 IPR029413 -
Lan4g0041 657 Gene3D - 461 653 - -
Lan4g0041 657 SUPERFAMILY Starch-binding domain-like 397 450 IPR013784 GO:0030246
Lan4g0041 657 SUPERFAMILY Galactose-binding domain-like 460 653 IPR008979 -
Lan4g0041 657 SUPERFAMILY Galactose mutarotase-like 31 318 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan4g0041 657 CDD RGL4_C 465 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0041 Lan-Chr4 453151 463848 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0041 26 655 Polysaccharide Lyase AT1G09890 54.976 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0041 K18195 - gmx:100776664 984.171