Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0040 ATGAAGAAAATGTGTAACATAAATAAAAGAGTTTTGATGCTATGGTTGTTTGGAATAACTATGCAGCTAGTCTTCCATGGTGGCTGTTCTGAGAATACACCATTGAGGAGAGCTTTGAGGGAAAACAATAGGCAGGAACCACCACTTTCTAATTATGCAGTGAAGCTGAATAATGAAAGTAATCATAAGTTGGTGGTTGACAATGGCATAATTTCTGTCACTTTGTCAATTCCTGAAGGCTACATTATTGGAATATCATATAATGGAATTGATAATATTCTTGAAGTTGAAAATAAAGAACAAGATAGAGGGTACTTGGATGTTGTTTGGAATGAACCTGGAAAATCATCTTCATTTGAGAGAATCCATGGGACAAAATTTTCAGTAATAACAGCAGAGGAAAATCTAGTTGAGGTTTCATTTTTAAGAATATGGGAATCTTCCATGAATGGCACAAGTGTCCCTATAAACATAGATACAAGGTACATCTTCCGAGGAAATGATTCTGGATTTTATTCATACGCAATATTTGATCGTCCGAAAGGATTGCCAGCTGTAGAAGTTGATCAAATTAGAATTGTTTTCAAGCTTCAGGAAAACAGGTTCAACTACATGGCTATAGAAGACAACATGCAAAGAATTATGCCAACAATGGAAGATAGAAAAATGGGCCAAAACTTGTCATATCCTGAAGCAATTCTATTAACCAACCCAAGTAACCCACAATTTAGAGGAGAGGTTGATGACAAATATCAATATTCAATTGAGAATAAAGACAACAAAGTACATGGTTGGATTAGTATTGATTCTGATTCACCAATGGGTTTTTGGATGATAACACCAAGTAATGAATTCAGAAATGGTGGACCCAATAAACAAGATCTCACTTCTCATGCGGGTCCCATCACCCTAAATATGTTTGTGAGTACTCACTATGCTGGAAAGGAAGTAACCATGTCATTTGAAGAAGGGGAGACATATAAAAAGGTTTTTGGTCCTGTTTTTGTTTACCTTAACTCTGCTACAACTAAAGATAGTTCACTTTCTCTTTGGTCAGATGCTGTGGATCAGCTATCAAAGGAAGTCAAAAGCTGGCCTTATGATTTTCCTAGATCACAAGATTTCATTCAACCCAATGAAAGAGGAAAAGTATTGGGAAGATTACTAATCCAAGATAGATACATCAAAGGAGGTACATTGCAGAATGCTAAAAATGCTTATGTTGGTCTTGCTTTGCCTGGAGATGCAGGATCATGGCAGAGAGAAAGCAAGGGCTATCAATTCTGGACTAGAACTGACTCAAAGGGATATTTCACAATAGAAAATATTGTACCTGGAGTTTATAATTTGTATGCATGGGTTCCTGGTTTTATTGGTGATTACAAATACAATACTTCAATCCTCATTACACAAGGAGGAGTCATGAATTTGGATAAATTGGTTTATATTCCTCCGAGAAATGGACCAACTCTTTGGGAAATCGGAGTTCCAGATCGTTCAGCCGCTGAATTCTATGTGCCAGACCCTTATCCTACTCTCATGAATAAATTATATAATGATCAACCTAGAGAGAAGTTTAGGCAATACGGTTTATGGGATCGTTATGTTGATTTATATCCAAATAATGATCTAGAATACACTATTGGTGTTAACAAGTTTAAGAAGGATTGGTTTTTTGCTCATGTTACAAGAAACATAGGAAATAATACATATGAACCAACTACATGGAAGATTATATTTGAACATGAACATGACATTTTTAGTGGAAACTACACACTACAATTGGCCTTGGCATCTGCTAAAGATGCTGAGCTACAAGTTCGGTTCAATAACCCTAGCATCAATCCACCACACTTTACAACAGGACAAATAGGTGGAGATAATGCTATTGCAAGGCATGGCTTGCATGGATTACATTGGTTATTTAGTATTGATATTTCAAGTGATTATTTTATGAAAGGAAAGAACATTATCTATATGAAGCAATCAAGAGCCATAAATTCTTTTCAAGGAGTTATGTATGATTATATTCGATTAGAAAGTCCTTGCACTTAA 2055 0.3562 MKKMCNINKRVLMLWLFGITMQLVFHGGCSENTPLRRALRENNRQEPPLSNYAVKLNNESNHKLVVDNGIISVTLSIPEGYIIGISYNGIDNILEVENKEQDRGYLDVVWNEPGKSSSFERIHGTKFSVITAEENLVEVSFLRIWESSMNGTSVPINIDTRYIFRGNDSGFYSYAIFDRPKGLPAVEVDQIRIVFKLQENRFNYMAIEDNMQRIMPTMEDRKMGQNLSYPEAILLTNPSNPQFRGEVDDKYQYSIENKDNKVHGWISIDSDSPMGFWMITPSNEFRNGGPNKQDLTSHAGPITLNMFVSTHYAGKEVTMSFEEGETYKKVFGPVFVYLNSATTKDSSLSLWSDAVDQLSKEVKSWPYDFPRSQDFIQPNERGKVLGRLLIQDRYIKGGTLQNAKNAYVGLALPGDAGSWQRESKGYQFWTRTDSKGYFTIENIVPGVYNLYAWVPGFIGDYKYNTSILITQGGVMNLDKLVYIPPRNGPTLWEIGVPDRSAAEFYVPDPYPTLMNKLYNDQPREKFRQYGLWDRYVDLYPNNDLEYTIGVNKFKKDWFFAHVTRNIGNNTYEPTTWKIIFEHEHDIFSGNYTLQLALASAKDAELQVRFNNPSINPPHFTTGQIGGDNAIARHGLHGLHWLFSIDISSDYFMKGKNIIYMKQSRAINSFQGVMYDYIRLESPCT* 685
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0040 684 Gene3D - 378 478 - -
Lan4g0040 684 SUPERFAMILY Galactose mutarotase-like 59 348 IPR011013 GO:0003824|GO:0005975|GO:0030246
Lan4g0040 684 Gene3D - 56 358 IPR014718 GO:0030246
Lan4g0040 684 Pfam Polysaccharide lyase family 4, domain III 490 679 IPR029411 -
Lan4g0040 684 Pfam Rhamnogalacturonate lyase family 52 247 IPR010325 -
Lan4g0040 684 SUPERFAMILY Galactose-binding domain-like 487 680 IPR008979 -
Lan4g0040 684 SUPERFAMILY Starch-binding domain-like 424 479 IPR013784 GO:0030246
Lan4g0040 684 Pfam Polysaccharide lyase family 4, domain II 404 474 IPR029413 -
Lan4g0040 684 CDD RGL4_C 492 680 - -
Lan4g0040 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
Lan4g0040 684 Gene3D - 488 680 - -
Lan4g0040 684 CDD RGL4_N 59 347 - -
Lan4g0040 684 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 58 683 - -
Lan4g0040 684 CDD RGL4_M 380 480 IPR029413 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan4g0040 Lan-Chr4 434265 442744 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0040 49 683 Polysaccharide Lyase AT1G09890 54.075 0.0 717