Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0008 ATGACAAAAAGAGTCTCAGAAGAAGGTTTTGTTTCTCAATCGATAACAATGGCGGCGGCGAAGCTACGGTGGGGAGAGTTAGAAGAAGACGACGGCGACGATTTGGATTTCCTTTTACCAGCAAGACAAGTTATTGGTCCTGATGATAATGGTATCAAGAAAGTTATTGATTACAAATTCGATGATGAAGGAAACAAGGTTAAGATCACTACCACCACTCGCACACGCAAACTCGCCAACGCGCGTCTCACTAAACGCGCCGTTGAACGACGCTCTTGGCCTAAGTTCGGTGATGCTGTTCATGAAGATGTTGGTAGCCGACTCACTATGGTTTCTACTGAAGAGATTCTCCTTGAGCGTCCCAAGCCACTAGGTGCTAAAACAGAGGAGCCACAGGCTGCCGGAGACCCATTTCAGAGAGGTGCTGTGCTCATGGTTTGTAGGACTTGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGTCCATACAAGGATCTTGCTGCACCATCTGAAGGATTCGTCGACAAGCCTACAGCATCAGATGCCACAACTGCTGTGACCGGTGCAACCAAGGGATCATATGTGCCTCCTAGTATGAGAGCAGGTGCAGATAGGACTAGTGGATCAGATATGCGCCGTAGGAATGATGAGAATTCTGTAAGGGTCACCAACCTCTCAGAGGACACAAGAGAACCTGACTTGCTTGAGCTGTTCCGTCCTTTCGGTGCCGTAAGCAGAGTCTATGTTGCTATTGACCAGAAGACTGGCACGAGCAGGGGATTTGGATTTGTTAACTTTGTAAGCAGGGAAGATGCACAAAGAGCAATCAACAAACTCAATGGATATGGCTATGATAATCTCATCCTCAGAGTGGAATGGGCCACCCCAAGGACAAACTAA 900 0.4778 MTKRVSEEGFVSQSITMAAAKLRWGELEEDDGDDLDFLLPARQVIGPDDNGIKKVIDYKFDDEGNKVKITTTTRTRKLANARLTKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGAKTEEPQAAGDPFQRGAVLMVCRTCGKKGDHWTSRCPYKDLAAPSEGFVDKPTASDATTAVTGATKGSYVPPSMRAGADRTSGSDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAIDQKTGTSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWATPRTN* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0008 299 Pfam Eukaryotic translation initiation factor 3 subunit G 43 166 IPR024675 -
Lan4g0008 299 MobiDBLite consensus disorder prediction 188 217 - -
Lan4g0008 299 PIRSF Transl_init_eIF-3_RNA-bind 14 299 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan4g0008 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 299 - -
Lan4g0008 299 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Lan4g0008 299 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 21 298 IPR017334 GO:0003743|GO:0005737|GO:0005852
Lan4g0008 299 Gene3D - 172 299 IPR012677 -
Lan4g0008 299 SUPERFAMILY RNA-binding domain, RBD 203 298 IPR035979 GO:0003676
Lan4g0008 299 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 286 IPR000504 GO:0003723
Lan4g0008 299 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 19 299 - -
Lan4g0008 299 SMART rrm1_1 219 292 IPR000504 GO:0003723
Lan4g0008 299 CDD RRM_eIF3G_like 219 294 IPR034240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0008 Lan-Chr4 88487 90438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0008 20 297 Eukaryotic Initiation Factors Gene Family AT3G11400 68.269 9.78e-151 423
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0008 K03248 - gmx:100818725 502.671