Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan4g0005 ATGATGATTCTAACTCGTTCTTCTGCTTCCTTTCTTCAAAACCCACAAATTCGTTTCTTCAACCATTCTCTTCTCAATCCTTCTTCACCTTCTTCTCTTTTCAAATCACTTTCCTTCTTTTCTCTCTCCATAACTCAAACCAGAACAAATTTTTCAACCACAACCAACAACGTTGTTCCAACATCACAAGATTCAAATGGAAAAGACACTTTTTTTGCTGAAGAATCTGTGTTTTGGAACTCACTTGGTCTTTCTGATACTATTTCTCGTTCCCTCTCTAACATTGGTCTCAATAGACCCTCCCTCGTTCAGGCTTCTTCTGTACCAGCTGTGCTGTCGGGGAAAGATGTGATAATTGCGGCGGAGACTGGCAGTGGTAAAACATACAGTTACCTAGTTCCTCTAATTGATAAACTACTACTACAAACCGTATCTGATCAAGAAGTGTCCTCGACCCGTAAAGTTCTGCTTGTCCTTTGTCCAAATGTACAACTATGTGAGCAGGTAGTTAGGATGGCTAGCAGTCTCTGTGGTGACAATGGTGAACCTATTGTTAGTGTGGCAGCCATTTGTGGTAGACAGGGATGGCCACACCGTGAACCTGATATCATTGTCACGACACCTGCTGCTCTTCTAAATTATGTTGACACTGATAGAGACCGTCGCTTGGAATTTACGCGTGGTGTTAAATATGTGGTTTTTGATGAAGCTGATATGCTTCTCTGTGGGAGCTTCCAGAATAAAGTACTCCGCCTGATAAACTTGCTCCGCTTTGATGAGAAACTCGTGTCTCAAGCAAAAGGAGCAGCAACAGAATTGCCAATAGAACTAGAATCTTCCTTGTCATCCCATGATGCTTTGGAAGTTGAAGAGGAACTTGAAAATGAAGCCATCTCAGAAGAGGATGATGATGATGACAATGAGGAAATTCCTGATATTAATAATGAAGTTGAACCTGTTAAACGAAGAGACTGGAGGAGAGTGAGGAAAACTTATGAGCGTAGTAAACAGTATATTTTTGTTGCAGCTACACTTCCAGTGAATGGAAAGAAAACGGCTGGAGGAATATTGAAACATATGTTTCCCGATGCTAAGTGGGTTAGTGGAAACTACCTTCATTGTCACAATCCAAGATTGGAGCAAAGATGGATTGAAGTTACAGTTGATACACAGGTGGATGAACTTATAAGGGCCGTAAAGTGGGGTTTCAGAGCTGAAGATTTGGATTCTGCTGGTGGCATTCACAGAACAATGGTGTTTGCCAACACTGTTGAGGCTGTTGAAGCTGTGGCAAAGCTATTGCACCACTCTGGGATTGAATGTTTACGTTATCATAAGGGTTGCACATTGGAGGAGCGAGCACAGACCTTAGTTGAGTTCCACGAGAAAGGTGGTGTTCTTGTGTGTACTGATGCAGCTGCACGTGGTGTTGATATTCCAAATGTCTTGCATGTTGTTCAGGCAGATTTTGCTACTTGTGCTGTAGACTTTTTGCATAGGGTTGGTCGTACAGCTAGAGCTGGTCAATTTGGAGTTGTTACTAGCATGTTCACCGAATCCAACAGGGATCTTGTTGATGCAGTTCGTCGTGCAGGGAAACTTGGTCAACCTGTGGAGACCGCATTTAGCAGGAAAAGGGGCTTCCGGAACAAGCTAAAAAAGAGAGCTGCTGCAGACAAGGTCAGAGATTCAGCAACTATTGAAGATTATTCTAGCATGAGAGTATGA 1728 0.4265 MMILTRSSASFLQNPQIRFFNHSLLNPSSPSSLFKSLSFFSLSITQTRTNFSTTTNNVVPTSQDSNGKDTFFAEESVFWNSLGLSDTISRSLSNIGLNRPSLVQASSVPAVLSGKDVIIAAETGSGKTYSYLVPLIDKLLLQTVSDQEVSSTRKVLLVLCPNVQLCEQVVRMASSLCGDNGEPIVSVAAICGRQGWPHREPDIIVTTPAALLNYVDTDRDRRLEFTRGVKYVVFDEADMLLCGSFQNKVLRLINLLRFDEKLVSQAKGAATELPIELESSLSSHDALEVEEELENEAISEEDDDDDNEEIPDINNEVEPVKRRDWRRVRKTYERSKQYIFVAATLPVNGKKTAGGILKHMFPDAKWVSGNYLHCHNPRLEQRWIEVTVDTQVDELIRAVKWGFRAEDLDSAGGIHRTMVFANTVEAVEAVAKLLHHSGIECLRYHKGCTLEERAQTLVEFHEKGGVLVCTDAAARGVDIPNVLHVVQADFATCAVDFLHRVGRTARAGQFGVVTSMFTESNRDLVDAVRRAGKLGQPVETAFSRKRGFRNKLKKRAAADKVRDSATIEDYSSMRV* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan4g0005 575 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 77 105 IPR014014 GO:0003724
Lan4g0005 575 MobiDBLite consensus disorder prediction 291 313 - -
Lan4g0005 575 Pfam DEAD/DEAH box helicase 103 261 IPR011545 GO:0003676|GO:0005524
Lan4g0005 575 CDD DEADc 88 259 - -
Lan4g0005 575 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 53 548 - -
Lan4g0005 575 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 22 53 548 - -
Lan4g0005 575 SMART ultradead3 96 382 IPR014001 -
Lan4g0005 575 CDD SF2_C_DEAD 379 517 - -
Lan4g0005 575 Pfam Helicase conserved C-terminal domain 415 508 IPR001650 -
Lan4g0005 575 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 108 363 IPR014001 -
Lan4g0005 575 Gene3D - 44 361 IPR027417 -
Lan4g0005 575 MobiDBLite consensus disorder prediction 291 316 - -
Lan4g0005 575 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 556 IPR001650 -
Lan4g0005 575 SMART helicmild6 428 508 IPR001650 -
Lan4g0005 575 Gene3D - 386 574 IPR027417 -
Lan4g0005 575 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 519 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan4g0005 Lan-Chr4 65445 72000 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan4g0005 322 529 Eukaryotic Initiation Factors Gene Family AT5G11200 25.523 2.03e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan4g0005 - - gmx:100780518 795.808