Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1730 ATGAATATGGTTGATGATGGTAGCAGAAATCGTACAAGAATCTCTAGGAAAAAGAAGCTACTTGTCAATGACAAAGTTGAGGTGAGGAGTATGGAAGTAAGTTCTCTAGGCTCATTGAATCCTGGGACAGTTATCCGTTGCGGGAAGAAAAAACGATGTATAAGATATGACAACATTGTAGAAGATGATGGAGTAACTTATTGTGAGCAAGTGGTGAATGTTCCTGCTGTTTTAGATGGTGGAAATTTCGGCTCTTCGCATTCCTACGAACGAATGATCATTAGACCAATCCCTCCTATACTCGAGATTGCGGAACATGATCTTCAATTTGGTCTATGTGTTGATGTTGATTATGAGGAAGCTTGGTGGGAAGGAGTTATATTCGATCGCGATAACGAAATGAAGGAGAGGAACGTATTTTTCCCGGATTTGGGTGATGAAATGAAGATAAGAGTTCAGCAATTGCGGATCACTCAGGACTGGGATGAAGTTTCTGATAGTTGGAAGCAGAGAGGGAAATGGGTGTTCCTCGAGTTAATCGAAGAGATTGCGAGTGAATCGTATATTCCTGTCTCGATCAAACAAATTTATTATGATGTTAGGAAAAGAGATGATTTTTTTGATAAGATCAAGGATTGGACTTGCAATATCAAGGACTTATGGAGAGAGCCAGTAATGGAGATCATTAACCTCTACGCCGATTTAACGATATCGGAAATTTTACATGTCTTAGACCTTCCGAAATGTCTCTCGGAAAAAACATCAGAACATGAGTCAGGTGAACATGAATCTGCTGATAATGTTGCAGCCAATATTCCAATTGTGACTAAACAAGACTCAATTGGACTTAAAACAACAACTAATGTTGAATCAAATGTGAAAGATGTTTGTCCTGTAACAATTGCACTATCATCACCTCTTAAAGATGTTGTAGTTGAACCTGAGATTTGTCCACAAGCTGTTGTCAAATATTACTTATACGCGACAAGGAACGACATCGGCGATAAAAACAAATGGAGATTGAAAGCTAAGAAGCATTTGTTAGCAGAAGGATGGGTCCTCGAGTATCCGAATAAGAACAGGACGAGGGCCGTGTACAAGTCTCCACAAAATCATATCCTGAAAAAACTCAAAGATGCATGCCGAGTATACCTCGAAGCAACCATTCCTAGATGGACTATTGCCGGAATCAGAACTCTAAATGTCTCATCCATCAATGAGGAAGGTGTTGATAGCGATAATATAATCGAGTGTGTGACCAGAATTCTTCAAAAGGATCCTGAATTCAATCTTAGAGATGACTCTCTAGCGAATAGTTCGGCTCCGAATACAAGACATCAACACATGGAGATGCCTAAACTTAACCATTTTCATCAGAAAGCTCAAAATGTTATATCTTGGTTAATAGAAAAAAACAAGGTTCTTGCAAGATCCAAAGTTTATTACCAGGGAAATAGAGGTAGGGACCCTCCGGCGGCCGAAGGGAGGATAACTCGCGACGGAATCAAGTGCAGATGTTGTCACAATATATATGGTATTAATGGCTTTGCTTCTCATGCTAGTGGTAGTAGTGATTTCAGTCCTTCTAGTAATATCTTTCTGAAAGATGGAAGATCACTCTTAGATTGTCAAAGAGAAGTTATGTATGATGATAGGACAAGTGAGACAACAGAAAAACCGAGAAATGATTTCGATGAAGACAAAAATGACGACATTTGTTCTGTTTGTCGATATGGTGGTGATATCATTTTATGCGACAAATGCCCGTCTGCATTTCATAAGGAGTGTATTGGTTTGAAGGAAATCCCTGATGGTCAATGGTATTGTCCATTATGTCATTGCACGATTTGTCGCAAAACCACAACCAAGAGCATTGAGGATGGACGTTTTCTTACTTGCACTCAGTGTCAACTTAAATATCATGTTGGATGCTTGAGAAATAGTGGAACAGATCAACATCTGGAACAATGGTTCTGTGGAAAAAATTGCGAAAAGATATATTATGGCCTTAATGAACTATTAGGAAAGGCAATTTCAGTGGGAGAGAACAATTTAACTTGGACATTGCTAAAGTTTGAAAACCCTAAGAGTAGTGATATTGGTAATACTACTAATAATGACTTCTTGATAGAGTGTTACACCAAACTCAGTGTTGCAGCTTCAGCTATGCATGAATGTTTTGTGCCCCAACAAAACCCTTTCTCTAGAAGAGATATCACAATAGATGTTAAATTCAGCAGATTGTCAAATCTTCCAAGGTTAAATTTCCAGGGTTTCTACACTGTACTTCTCGAAAAAAATGAAGAACTAGTTAGTGTTGCAAATATTAGGGTATATGGAGAAAAGGTGGCAGAAGTACCTCTTGTAGGTACAAGACATCAGTTTCGAAAACTTGGAATGTGTCGCATTTTGATGAGCATGCTTGAAAAGGTGCTCATAAATTTGGGAGTTAAGAAGCTAGTTTTGCCTGCCATTCCAGATACACTAGAAACATGGACAAAGTGTTTCGATTTTGTGAACATGACAAGTTCCGATCGAAAACAGTTTTTGGACCATGTTTTCTTAGAATTTCCGGAAACCATCTTGTGCCATAAGGTGTTGACAAGGAATACATCCCCGGATTCAGATTAA 2631 0.3869 MNMVDDGSRNRTRISRKKKLLVNDKVEVRSMEVSSLGSLNPGTVIRCGKKKRCIRYDNIVEDDGVTYCEQVVNVPAVLDGGNFGSSHSYERMIIRPIPPILEIAEHDLQFGLCVDVDYEEAWWEGVIFDRDNEMKERNVFFPDLGDEMKIRVQQLRITQDWDEVSDSWKQRGKWVFLELIEEIASESYIPVSIKQIYYDVRKRDDFFDKIKDWTCNIKDLWREPVMEIINLYADLTISEILHVLDLPKCLSEKTSEHESGEHESADNVAANIPIVTKQDSIGLKTTTNVESNVKDVCPVTIALSSPLKDVVVEPEICPQAVVKYYLYATRNDIGDKNKWRLKAKKHLLAEGWVLEYPNKNRTRAVYKSPQNHILKKLKDACRVYLEATIPRWTIAGIRTLNVSSINEEGVDSDNIIECVTRILQKDPEFNLRDDSLANSSAPNTRHQHMEMPKLNHFHQKAQNVISWLIEKNKVLARSKVYYQGNRGRDPPAAEGRITRDGIKCRCCHNIYGINGFASHASGSSDFSPSSNIFLKDGRSLLDCQREVMYDDRTSETTEKPRNDFDEDKNDDICSVCRYGGDIILCDKCPSAFHKECIGLKEIPDGQWYCPLCHCTICRKTTTKSIEDGRFLTCTQCQLKYHVGCLRNSGTDQHLEQWFCGKNCEKIYYGLNELLGKAISVGENNLTWTLLKFENPKSSDIGNTTNNDFLIECYTKLSVAASAMHECFVPQQNPFSRRDITIDVKFSRLSNLPRLNFQGFYTVLLEKNEELVSVANIRVYGEKVAEVPLVGTRHQFRKLGMCRILMSMLEKVLINLGVKKLVLPAIPDTLETWTKCFDFVNMTSSDRKQFLDHVFLEFPETILCHKVLTRNTSPDSD* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1730 876 SMART PHD_3 572 613 IPR001965 -
Lan3g1730 876 SMART PHD_3 614 663 IPR001965 -
Lan3g1730 876 SUPERFAMILY FYVE/PHD zinc finger 614 669 IPR011011 -
Lan3g1730 876 SMART agenet_At_2 106 163 IPR014002 -
Lan3g1730 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 548 614 IPR013083 -
Lan3g1730 876 PANTHER PHD ZINC FINGER PROTEIN 294 433 - -
Lan3g1730 876 PANTHER PHD ZINC FINGER PROTEIN 455 875 - -
Lan3g1730 876 PANTHER PHD ZINC FINGER PROTEIN 4 255 - -
Lan3g1730 876 CDD NAT_SF 762 822 - -
Lan3g1730 876 ProSiteProfiles Zinc finger PHD-type profile. 570 615 IPR019787 -
Lan3g1730 876 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 757 829 IPR016181 -
Lan3g1730 876 Pfam Agenet domain 23 99 IPR008395 -
Lan3g1730 876 Pfam Tify domain binding domain 495 546 IPR032308 -
Lan3g1730 876 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 615 666 IPR013083 -
Lan3g1730 876 Pfam PHD-finger 572 614 IPR019787 -
Lan3g1730 876 SUPERFAMILY FYVE/PHD zinc finger 556 613 IPR011011 -
Lan3g1730 876 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 455 875 - -
Lan3g1730 876 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 294 433 - -
Lan3g1730 876 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 4 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1730 Lan-Chr3 29855298 29861861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1730 462 812 PHD Transcription Factor Family AT5G58610 45.556 1.35e-96 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan3g1730 Agenet 1.4e-07 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1730 - - lang:109342495 1794.63