Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1728 ATGGATGTTGTCTCACTAGAACTGTATATTGTAGGTCCAACCGGTAGTCAACCATTGTTGATGGAGCGGCCGGGGCTGGGGAGCTTGAATGGCATTCATCATATTGTTGAAATAGCTGGAAGCACCGACACTTCCACTACAGCCTCGAACGATAGACATGTTAATGGCATTGAAATACCACAGCAAGAAGACAGACATAATGGTGCAAGATTAACAGTTTCTCAGCTGCCGGTTTTAACATCTAGTGCATCTACCAGGTCAAATACTAGGAACTCTTCTTCAAGACGAGGGAATACCCGTCGGCGTACGAGCCCTGTGCATTCTGCATTATGGATATCTGTTGAGTTCGTCCTCTTAGTAAGCCAGATTATTGCATCTATTGTTGTTTTGTCGTTGTCGAGGCATGAGCATCCACGTACCCCATTGTTTGAATGGATCGTGGGTTATGCAATTGGATGTGCTGCTACTTTCCCTCTGCTTCATTGGCGGTATTATCATCATAACCATATTCGAGAGCAAGATTCATTTCAATCACATCAAACATCTCCTCGAGTTGATGATCCTTCAGGGGCACTTTTCAGTTCCAGATCTAATGAAGATGATCAGGCTGCTATTGTATCATCCAGAAGCAATCTAGCTTCAGCATTGACAAATAGAAGAATGAAGACACTAATGGAATACTTTAAAATATCCTTAGATTGCTTTTTTGCTGTATGGTTCGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCAGATGATGCTCCTAACCTGTACAGGTTATGTATAGTGTTTCTTGTCTTTAGTTGTATTGGTTATGCTATGCCCTTCATTCTCTGCTCAACAATATGCTGTTGTCTCCCTTGTATAATTTCCATCCTTGAGGTTAGAGAGGATCTGACACAGAACACTGGAGCAACTTCTGAATCCATTAATGCTTTGCCAACTTTCAAGTTCAAGATGAAGAAAAATAAAAGAAGTGGTGAAAGCCATTCTGCTGCTGCTGAAGGTGGAATTGTGGCTGCAGGAACTGAAAAGGAGCGTGTGATCACTGGAGAAGATGCTGTTTGCTGCATCTGCCTGGCGAAGTATGAGAACAATGATGAGCTAAGAGAATTGCCTTGTTCCCATATTTTCCACAAAGAGTGTGTAGACAAGTGGTTGAAGATAAATGCATTATGCCCTCTTTGCAAGAGTGAGGTTGGTGAGAACTTAACAAGATCGAACTCCGGGGAAGATGCCAGCCAATAA 1257 0.4256 MDVVSLELYIVGPTGSQPLLMERPGLGSLNGIHHIVEIAGSTDTSTTASNDRHVNGIEIPQQEDRHNGARLTVSQLPVLTSSASTRSNTRNSSSRRGNTRRRTSPVHSALWISVEFVLLVSQIIASIVVLSLSRHEHPRTPLFEWIVGYAIGCAATFPLLHWRYYHHNHIREQDSFQSHQTSPRVDDPSGALFSSRSNEDDQAAIVSSRSNLASALTNRRMKTLMEYFKISLDCFFAVWFVVGNVWIFGGHSSADDAPNLYRLCIVFLVFSCIGYAMPFILCSTICCCLPCIISILEVREDLTQNTGATSESINALPTFKFKMKKNKRSGESHSAAAEGGIVAAGTEKERVITGEDAVCCICLAKYENNDELRELPCSHIFHKECVDKWLKINALCPLCKSEVGENLTRSNSGEDASQ* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1728 418 SUPERFAMILY RING/U-box 350 406 - -
Lan3g1728 418 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 418 - -
Lan3g1728 418 SMART ring_2 359 399 IPR001841 -
Lan3g1728 418 MobiDBLite consensus disorder prediction 80 102 - -
Lan3g1728 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 343 415 IPR013083 -
Lan3g1728 418 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 418 - -
Lan3g1728 418 Pfam Ring finger domain 359 400 IPR001841 -
Lan3g1728 418 ProSiteProfiles Zinc finger RING-type profile. 359 400 IPR001841 -
Lan3g1728 418 MobiDBLite consensus disorder prediction 80 94 - -
Lan3g1728 418 CDD RING-H2_RNF111_like 358 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1728 Lan-Chr3 29808613 29814022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1728 78 411 C3H Transcription Factor Family AT1G80400 52.436 5.46e-132 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1728 - - gmx:100785559 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1728 3 29808613 29814022 Lan3g1146 3 23756453 23760770 PCT
Lan3g1146 3 23756453 23760770 Lan3g1728 3 29808613 29814022 PCT