Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1722 ATGTCAAACAATAACAACCTCGGATCTCTCCTCATTCCCCACCACCATTCCAAGTCCGCCACCACTCTCCGCCTCTGCCACTCATCCTTCCGCCGCATCCTCTTCCACTCCATCACCTGCGGCTCCATCTCCCACCGCCGTCACCACACCACGCCCCCTATATCGGAGGATGAGGAAAACACGGTGAAGCCGGAGACGAGGTTGTCGGAGAAGCTGTCGGATCTGTTGAACATGGAGGACACGGAAACGAAGGAGGAGGCGTTGGAGGAGATGAAGAAGGTGGTGAAGGAGTTGCGAGAGGAGGATACACGGCGGAGAGTGACGGCGGCGGGTATGGTGAGGAAGGTGGCGAAGGAAGATGTGGAGGTTAGAGAAACACTTGCAATGCTTGGAGTGATTCCTTCGTTAGTTGCAATGATTGATTATGAAGAAGATGTTCATTCTCAGATCGCTTCTCTTTATGCTTTGCTCAATCTCGGAATCGGAAATGATGCGAATAAAGCGGCGATTGTTAAAGTTGGTGCTGTTCAGAAGATGCTCAAGCTGATTGAATTACCAGGGGGTCCAAATTCACTCGTCTCTGAAGCAATTGTTGCAAATTTTCTCGGATTGAGTGCTTTGGATTCGAACAAACCAATAATTGGGTCCTCAGCTGCAATATCATTCCTAGTTAGAACCCTTCAGAGTTTAGATGATAAAACTAGCCCCCAAGCGAAGCAAGATGCTCTCAGAGCACTATACAATCTTTCGATCTTTCCAGGCAATGTTTCATGCATTTTGGAAACCGATTTGGTCCATTTTCTGGTAAACTCAATAGGAGACATGGAACTAACGGAGAGAATCCTCTCAATTTTAAGCAACTTGGTATCAACTCGAGAGGGTAGGAAAGCTATTAGCATGGTGCTGGATGCGTTCCCTATCTTGGTGGATGTATTGAATTGGACTGATTCCCCGAAATGCCAAGAAAACGTGTCATACATTTTGATGGTCATGGCACACAAATCCTATGGTGACAGGCAGGCCATGATTGAGGCTGGGATCGCTTCAGCATTGCTCGAATTGTCCCTTTTGGGTACCACATTGGCCCAGAAAAGGGCGTCGAGGATATTGGAATGTTTGAGGGTAGACAAAGGGAAGCAGGTTTCCGGGAGCTTTGGTGGAAACTTAGTTGCAAATGTATCAGCCCCGATTTATGGCTCTTTGGCATCTTGCGCAAAAAGAGATGGAGAAGGGGCGGAGTGTTTGGAGGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAGTTAGTCCAACAGAGTTTGCAAAACAACATGAGGAAGATTGTAAAGCGGGCCAATTTGCCTCAAGATATTGTTCCGTCTGATCATTTTAAGTCACTCACTTCAAGTTCAACTTCGAAGAGCCTGCCGTTTTGA 1425 0.473 MSNNNNLGSLLIPHHHSKSATTLRLCHSSFRRILFHSITCGSISHRRHHTTPPISEDEENTVKPETRLSEKLSDLLNMEDTETKEEALEEMKKVVKELREEDTRRRVTAAGMVRKVAKEDVEVRETLAMLGVIPSLVAMIDYEEDVHSQIASLYALLNLGIGNDANKAAIVKVGAVQKMLKLIELPGGPNSLVSEAIVANFLGLSALDSNKPIIGSSAAISFLVRTLQSLDDKTSPQAKQDALRALYNLSIFPGNVSCILETDLVHFLVNSIGDMELTERILSILSNLVSTREGRKAISMVLDAFPILVDVLNWTDSPKCQENVSYILMVMAHKSYGDRQAMIEAGIASALLELSLLGTTLAQKRASRILECLRVDKGKQVSGSFGGNLVANVSAPIYGSLASCAKRDGEGAECLEEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPQDIVPSDHFKSLTSSSTSKSLPF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1722 474 Coils Coil 412 435 - -
Lan3g1722 474 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 4 474 - -
Lan3g1722 474 SMART arm_5 120 161 IPR000225 GO:0005515
Lan3g1722 474 SMART arm_5 207 251 IPR000225 GO:0005515
Lan3g1722 474 SMART arm_5 252 290 IPR000225 GO:0005515
Lan3g1722 474 SMART arm_5 294 333 IPR000225 GO:0005515
Lan3g1722 474 SMART arm_5 163 206 IPR000225 GO:0005515
Lan3g1722 474 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 4 474 - -
Lan3g1722 474 Coils Coil 78 104 - -
Lan3g1722 474 SUPERFAMILY ARM repeat 75 378 IPR016024 -
Lan3g1722 474 Gene3D - 59 449 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1722 Lan-Chr3 29749586 29752526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1722 63 374 U-box Gene Family AT2G23140 30.794 3.68e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1722 - - gmx:100808483 558.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0936 10 14005717 14008746 Lan3g1722 3 29749586 29752526 LSH
Lan3g1722 3 29749586 29752526 Lan15g1057 15 19610355 19612784 PCT
Lan3g1722 3 29749586 29752526 Lan3g1106 3 23421493 23423610 PCT
Lan15g1057 15 19610355 19612784 Lan3g1722 3 29749586 29752526 PCT
Lan3g1106 3 23421493 23423610 Lan3g1722 3 29749586 29752526 PCT