Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1721 ATGAGTAGCCTGGTTGAGAGGCTTCGTGTAAGATCAGATCGCAGGCCAATCTATAATATAGACGAGTCAGATGATGATGCTGATTTTTTGCCTAGAAAGCATGGGACAACTCAGGAAAAGTTTGATAGGATAGTCAGAAGTGATGCAAAAGAGGATTCATGTCAAGCTTGTGGAGAAAGTGGAGCTCTTGTTAGATGTGAAACATGCACTTATACTTTCCATTCTAGTTGTTTACTTCAACCCTTTAAAAGCCCCCTTTCGGACCACTGGAAGTGCCCTGAATGCGTTAGCCCACTTAATGATATTGATAAGATATTAGATTGTGAGACGTGTCCTACTGTAGCTGGTGATAGTGATGCCACTAAATCGGGTCCAAACCAAAAGTATCTTGTTAAGTGGAAGGGACTGTCATACTTGCACTGCAAATGGGTCTCAGAGGAAGAGTTTCTGAAAGCTTTCAAGAATTATCCTCGTCTAAGGACCAAAATAAACAACTTTCATCGTCAAATGGCATCAGTGAATTCTTCTGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTATGGTTGATCGAATACTTACTTGCAGGGGTAACGAGGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTGCATATGATGAATGCCATTGGGAACTTGAGTCAGATATCTCTGCATTTCAGCCGGAAATAGATAGATTCAATAGATTTCAGTCTAGGTCCAGGAAAAAGCCTTCTAGTGAGCAAAAAGGCAGTGATAACCATGTTGCTGAGTTGAATCAGCAGAAAGAGTTTCAACAGTGTGAGCATAGCCCTGAGTTTCTTTCAGGGGGTTCATTACATCCATATCAACTTGAAGGGTTGAACTTCTTACGATTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCTTCTCTTCTTGAAGAGAACATTACTCCACATCTAGTGGTTGCTCCACTTTCAACTTTGCGAAACTGGGAGCGTGAATTTGCTACTTGGGCACCTCAAATGAATGTTGTTATGTATTTCGGATCTGCTCAAGCTCGTTCTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAGCAGGAGAATATCAAGAAAAAGAAATGTGGACAAACAGTTAATAAAATCAAGCATGACATGGTTAAGTTTGATGTCCTTTTGACATCCTATGAGATGATTAACCTTGACACAGCAACATTGAAATCTATAAAGTGGCAGTGCATGATAGTGGATGAAGGTCATCGTCTCAAAAACAAGGATTCCAAACTGTTTTCTTCATTGAAGCAATATTCTACGAGACATCGTGTGCTTCTGACAGGAACTCCGCTTCAGAACAATCTGGATGAACTTTTTATGCTTATGCACTTCCTTGATGCTGGCAAGTTTGGAAGTTTAGAGGAGTTCCAGGAAGAGTTTAAAGATATCAATCAAGGGGAACAGGTCTTGAGGCTTCATAAAATGTTGGCTCCACATCTTCTGCGAAGAGTGAAGAAAGATGTCATGACAGAACTGCCTCCTAAAAAGGAACTTATTTTACGTGTTGAATTAAGCAGCAAACAAAAAGAATATTATAAGGCAATTTTGACCCGTAATTATGAGATATTAACTCGCCGTGGTGGTGCACAAATTTCTCTTATTAATGTTGTTATGGAACTGCGTAAGCTCTGCTGTCATCCCTACATGTTTGATGGAGCTCAGCCACTTCTTGAAGATGAAAAAGAAGCATTCATACACCTTCTGGAATCATCAGGGAAATTGCAATTGTTGGACAAGATAATGGTGAAGCTTAAAGAGCAAGGACATAGAGTCCTGATATATTCCCAATTTCAGCACATGCTTGATTTGCTTGAAGATTACTGTTCTTATAAGACTTGGCATTATGAAAGGATAGATGGCAAGGTTGGTGGAGCTGAAAGACAGATACGGATAGATAGATTTAATGCCAAAAATTCTACAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGGGGCATTGGGATAAACCTTGCAACAGCTGACACAGTTATTATATATGACAGTGATTGGAATCCACATGCTGATCTACAAGCTATGGCTAGAGCTCATCGACTCGGACAAACTAACAAGGTGATGATTTTTAGGCTTATAACGCGAGGCACAATTGAAGAAAGGATGATGCAATTGACAAAGAAGAAAATGGTGTTAGAACATGTAGTAGTAGGGAGGCTAAAGGCTCAAAATATTAACCAGGAAGAGTTGAACGATATTATAAGCTATGGTTCAAAGGAGTTATTTGCTGATGAGAATGATGAAGCAGGAAAATCTCGCCAAATTCATTATGATGATGCTGCCATAGACAGGCTGCTGGATCGTGATCAAGTTGGAGAAGAAGAGGCCAATTTGGATAATGAAGATGAAAATGGATTTCTGAAGGCCTTTAAGGTGGCAAATTTTGAATACATTGATGAAGTTGAGGCGGCAAAAGAGGAGGAGGCACGAAAAAGAGAAATGGAGAATAAATCTTCAGTGAACATCTCAGCAAGAGCAAACTACTGGGAAGAGTTGTTAGGAGACAGATATCAAGAGCATAAAGTTGATGAGCTTAACTCCTTAGGCAAAGGGAAGCGAAGCCGCAACAAGATGCTGGGGGATGATTTTGCTGGTCCTGAAGATTTAAACTCTGATGGTGAAGATGACAATTATGAAGCGGATCCGGATCTCACTGATGATTCTTCAAATTCAAATGGAACTGTTTCTACTAGAAGGTCTCACAAGAAGAAAGTTCATGCAATTAGCACAGAGCCGCTTCCTTTAATGGAAGGTGAAGGAAGATCACTCAGAATACTTGGTTTTAATCAAAATCAGAGGGCTGCTTTTCTTCAAATTTTGATGAGGTTTGGGATCGGTGATAATGATTGGGAAAGTTTTGTTCCTCGCATGAAACAGAAAAGTGTTGAAGAAATCAGAGAGTATGGAATGCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCCCCAACTTTCTCAGATGGTGTTCCAAAAGAAGGACTTCGGATAACTGATTTACTTGTTAGGCTTGCAATTCTGATTCTGATAAAGGAGAAAGTGCAGTTTGCCTCAGAAAATCCTGGAACTCAACTTTTTTCGGATGACATCTTAGCACGCCATGCAGGTTTGAAGTATGTGAAGGCATGGAAGCAGTACCATGATATTGTGTTACTGCAGGCTGTGTTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAGGTTCTGAATCTTCAGGAAGTTATCTGTCAGGAGTTGAATATTCCCCTTGTAAATGCACCAGTTCCTGGACAAGTTGGCGCTCAAGTGCAAACTAATGCTGAGAGTAATGTTGCAAATATAACTAAGGAAAATGCTCAGAGTGACATAGCTGCTGATGGTGCACAAGGTGGTTCTGGTGATGCTAGGAACCAAACACAGTTATTGCGAGAATCCACAATGTTGTATCATTATAGAGACATGCTGAGAAAACAGATTGACTTTGTAAAAAGGAGGTATCAACTCTTGGAAAAAGGTCTCAATACTGAGTACCAGGATGAATACTTTAAAGATCCAAATGCAACAATTCCAGATGATATACCGAGTGATATATCAGGGGAGACTGTCACCAAATTGATTGACCAACTGCCTCAAGTAGAAGCAATAGCTTCTCAAGAATTACCTGTTGCTGCTTCTGATTATGGTCCGAATCGGCTGGAATTAGTTCACAATTACAATGAGATGGGCAAGGTGTTGAATGGAAGCACCATGGATGTAGTTGAAACATATTTGGCAAAAGATCCTACTGATGTCAATGCTATGAAGAACTTGCATCAACTTGAAAGCATTTGCGAAGATGTCAACAATATTCTCACTCCAAAACAAAAGTGA 3960 0.3977 MSSLVERLRVRSDRRPIYNIDESDDDADFLPRKHGTTQEKFDRIVRSDAKEDSCQACGESGALVRCETCTYTFHSSCLLQPFKSPLSDHWKCPECVSPLNDIDKILDCETCPTVAGDSDATKSGPNQKYLVKWKGLSYLHCKWVSEEEFLKAFKNYPRLRTKINNFHRQMASVNSSDEDFVAIRPEWTMVDRILTCRGNEEKEYLVKWKELAYDECHWELESDISAFQPEIDRFNRFQSRSRKKPSSEQKGSDNHVAELNQQKEFQQCEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLLEENITPHLVVAPLSTLRNWEREFATWAPQMNVVMYFGSAQARSVIREYEFYFPKKQENIKKKKCGQTVNKIKHDMVKFDVLLTSYEMINLDTATLKSIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQGEQVLRLHKMLAPHLLRRVKKDVMTELPPKKELILRVELSSKQKEYYKAILTRNYEILTRRGGAQISLINVVMELRKLCCHPYMFDGAQPLLEDEKEAFIHLLESSGKLQLLDKIMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKTWHYERIDGKVGGAERQIRIDRFNAKNSTRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGTIEERMMQLTKKKMVLEHVVVGRLKAQNINQEELNDIISYGSKELFADENDEAGKSRQIHYDDAAIDRLLDRDQVGEEEANLDNEDENGFLKAFKVANFEYIDEVEAAKEEEARKREMENKSSVNISARANYWEELLGDRYQEHKVDELNSLGKGKRSRNKMLGDDFAGPEDLNSDGEDDNYEADPDLTDDSSNSNGTVSTRRSHKKKVHAISTEPLPLMEGEGRSLRILGFNQNQRAAFLQILMRFGIGDNDWESFVPRMKQKSVEEIREYGMLFLSHIAEDITDSPTFSDGVPKEGLRITDLLVRLAILILIKEKVQFASENPGTQLFSDDILARHAGLKYVKAWKQYHDIVLLQAVLKHGYGRWQAIVDDKVLNLQEVICQELNIPLVNAPVPGQVGAQVQTNAESNVANITKENAQSDIAADGAQGGSGDARNQTQLLRESTMLYHYRDMLRKQIDFVKRRYQLLEKGLNTEYQDEYFKDPNATIPDDIPSDISGETVTKLIDQLPQVEAIASQELPVAASDYGPNRLELVHNYNEMGKVLNGSTMDVVETYLAKDPTDVNAMKNLHQLESICEDVNNILTPKQK* 1320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1721 1319 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 606 767 IPR001650 -
Lan3g1721 1319 CDD CD1_tandem 98 168 - -
Lan3g1721 1319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 95 IPR013083 -
Lan3g1721 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 515 770 IPR027417 -
Lan3g1721 1319 SMART ultradead3 276 489 IPR014001 -
Lan3g1721 1319 Gene3D - 1032 1207 - -
Lan3g1721 1319 Gene3D - 96 192 - -
Lan3g1721 1319 Coils Coil 831 851 - -
Lan3g1721 1319 Gene3D - 272 522 IPR038718 -
Lan3g1721 1319 SUPERFAMILY Chromo domain-like 66 172 IPR016197 -
Lan3g1721 1319 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 292 478 IPR014001 -
Lan3g1721 1319 Pfam Chromo (CHRromatin Organisation MOdifier) domain 116 155 IPR023780 -
Lan3g1721 1319 Pfam Chromo (CHRromatin Organisation MOdifier) domain 189 236 IPR023780 -
Lan3g1721 1319 PANTHER CHD3-TYPE CHROMATIN-REMODELING FACTOR PICKLE 5 1050 - -
Lan3g1721 1319 MobiDBLite consensus disorder prediction 901 917 - -
Lan3g1721 1319 CDD SF2_C_SNF 601 727 - -
Lan3g1721 1319 ProSiteProfiles Chromo and chromo shadow domain profile. 188 249 IPR000953 -
Lan3g1721 1319 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 5 1050 - -
Lan3g1721 1319 Gene3D - 193 236 - -
Lan3g1721 1319 Gene3D - 523 747 IPR027417 -
Lan3g1721 1319 SUPERFAMILY Chromo domain-like 175 237 IPR016197 -
Lan3g1721 1319 ProSiteProfiles Chromo and chromo shadow domain profile. 100 178 IPR000953 -
Lan3g1721 1319 SMART DUF1087_2 837 902 IPR009463 -
Lan3g1721 1319 Pfam CHD subfamily II, DUF1087 838 892 IPR009463 -
Lan3g1721 1319 SMART PHD_3 53 96 IPR001965 -
Lan3g1721 1319 CDD CD2_tandem 186 236 - -
Lan3g1721 1319 ProSiteProfiles Zinc finger PHD-type profile. 51 98 IPR019787 -
Lan3g1721 1319 MobiDBLite consensus disorder prediction 882 940 - -
Lan3g1721 1319 SMART helicmild6 632 716 IPR001650 -
Lan3g1721 1319 SMART DUF1086_2 912 1065 IPR009462 GO:0003677|GO:0006338
Lan3g1721 1319 Pfam Helicase conserved C-terminal domain 603 716 IPR001650 -
Lan3g1721 1319 SMART chromo_7 186 239 IPR000953 -
Lan3g1721 1319 SMART chromo_7 99 161 IPR000953 -
Lan3g1721 1319 MobiDBLite consensus disorder prediction 882 896 - -
Lan3g1721 1319 Pfam CHD subfamily II, SANT-like domain 930 1062 IPR009462 GO:0003677|GO:0006338
Lan3g1721 1319 Pfam SNF2-related domain 300 580 IPR000330 GO:0005524|GO:0140658
Lan3g1721 1319 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 513 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1721 Lan-Chr3 29726038 29747358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1721 302 743 RAD5 or RAD16-like Gene Family AT1G02670 24.330 1.06e-31 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan3g1721 SNF2_N 1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1721 K11643 - gmx:100790230 1996.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1786 6 29176737 29196652 Lan3g1721 3 29726038 29747358 LSH
Lan3g1721 3 29726038 29747358 Lan15g1056 15 19585017 19606496 PCT
Lan3g1721 3 29726038 29747358 Lan3g1104 3 23384526 23402641 PCT
Lan15g1056 15 19585017 19606496 Lan3g1721 3 29726038 29747358 PCT
Lan3g1104 3 23384526 23402641 Lan3g1721 3 29726038 29747358 PCT