Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1720 ATGGAAAAACTGAGTATGGAAGCATACCTTTGTGATAACATACTCTCTACTCCAACTTCAACTACACCATTGCCAAAATCACTTAAAGAAGAAGAAAATGAGTCAAAGGTACTAATCACTTTACTAGATCTGAATAATGTATGTGACAATGATTATTCTACTCTTGCTTTCACTCCACAAGGTCAAGAACTCAATCTCATCACTTGTTTGGATAATATTGATTCTTCATCACACAGAGTGTTTTCATGCAACTATTGCCATAGAAAGTTCTATAGTTCACAAGCACTAGGAGGACACCAAAATGCTCATAAAAGAGAGAGATCAATAGCAAAAAGAGGAACACAAATAATGATCCATAACAACCATCACTATGGAAGTACTATTGGGGTTCAAGCACATTCTATGATTCATAAGCCTTTTCATGTTTTCTCTAATGGATTTGGAAACCCTTTTGGAAGTTATCATCATGGTTGGTCAAGATTTTCAAAGCAGGTTATGCCAGATTTTCATAGAACAACAACAAGACCTGCGTTATTATCATCAACAACAAGAAGCAGTGTTGGTAGATTTGAAGTGATGAATACTATGATGAATTCTGCATCAAATAGTGGATATATGGTGAGTGGTGGAACTCATTTGAAGATTAGTGATAGTAATAATCATGAAGAAATGAACCATCTTGATTTATCTCTCAAGCTCTGA 702 0.349 MEKLSMEAYLCDNILSTPTSTTPLPKSLKEEENESKVLITLLDLNNVCDNDYSTLAFTPQGQELNLITCLDNIDSSSHRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGTQIMIHNNHHYGSTIGVQAHSMIHKPFHVFSNGFGNPFGSYHHGWSRFSKQVMPDFHRTTTRPALLSSTTRSSVGRFEVMNTMMNSASNSGYMVSGGTHLKISDSNNHEEMNHLDLSLKL* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1720 233 SUPERFAMILY beta-beta-alpha zinc fingers 78 109 IPR036236 -
Lan3g1720 233 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Lan3g1720 233 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 124 233 - -
Lan3g1720 233 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 117 - -
Lan3g1720 233 Gene3D Classic Zinc Finger 63 138 - -
Lan3g1720 233 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Lan3g1720 233 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 124 233 IPR044246 GO:0009788
Lan3g1720 233 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 117 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1720 Lan-Chr3 29720609 29721349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1720 3 233 C2H2 Transcription Factor Family AT5G10970 33.333 1.61e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1720 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1720 3 29720609 29721349 Lan15g1054 15 19568309 19569819 PCT
Lan3g1720 3 29720609 29721349 Lan14g0825 14 15044137 15045231 PCT
Lan3g1720 3 29720609 29721349 Lan3g1102 3 23366425 23367582 PCT
Lan15g1054 15 19568309 19569819 Lan3g1720 3 29720609 29721349 PCT
Lan14g0825 14 15044137 15045231 Lan3g1720 3 29720609 29721349 PCT
Lan3g1102 3 23366425 23367582 Lan3g1720 3 29720609 29721349 PCT