Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1704 ATGAAGAAAGAAAATAGAAAAGTTGATGGTGAAGAAGAAGATGTTATGAGAATGACTAGGGCAAGGGCTAGAATGATGGGAGGAGTATCAGCTTCATCAAAACCACCCTTTAAGAAGAAGGAACCACTCACTGATATAACTAACACCCAATCAAGACGAGACATATATATAATCTGTCAGAAACTAAATTCCTCATATGGCCTTGGGATTGTGGACATTGATTCAGAGATAAAGGATCCTCTTCTTTGGAGTTCTTATGCCATTGATATATACAACAATATACGTGTCACAGAGCGTGAAAGGAGACTATCAAGCGATTACATGGAGAAGTTGCAGCAGGATATCAGCCCAGGCATGCGAGCAATTCTTGTTGATTGGCTTGTGGAGGTTTCTGAGGAATATAACTTAGTTCCAGACACTCTTTACCTTACAGTGAATCTCATTGATCGATTTCTTTCTGCTAGTTTGATTAAGAAACAAAAGCTGCAGCTGCTTGGTGTTACTTGCATGCTCATTTCTTCAAAGTATGAGGAGATTAAAGCTCCCCAAGTAAAAGAATTTTGCGTCATCACAGACAATGCATACACCAAAGCAGAGGTTCTGAAAATGGAGAGTGAAGTTCTAAAGCTTCTTCATTTTCAATTATCTGTTCCTACAACCAAAACATTTCTAAGGAGATTCATCAAAGCAGCACAATCTTCTTACGAGGTTGGTTATGTTGAACTGGAATTCCTAGCAAATTATTTAGCAGAGCTTACTCTTGTTGAATACAGCTTCTTGCAGTTTCTACCTTCCATGATAGCTGCATCTGCTGTATTACTTGCTAGATGGAACCTCATTCAGTCTGAACATCCATGGAATCCAACTATGGAGCACTATACAAATTACAAAGTGTCAGACCTTAAAACTACTGTTCTTGCACTCGCAGATTTGCAACTTAATACCAATGGCAGTTCTCTGAATGCTGTGTGTGAAAAATATAAGCAACAAAAGTTCGAGTGTGTTGCAAAATTGGCTCCAAAACCTGTGCAAACACTCTTCCAGATTCAAATGTAA 1056 0.3864 MKKENRKVDGEEEDVMRMTRARARMMGGVSASSKPPFKKKEPLTDITNTQSRRDIYIICQKLNSSYGLGIVDIDSEIKDPLLWSSYAIDIYNNIRVTERERRLSSDYMEKLQQDISPGMRAILVDWLVEVSEEYNLVPDTLYLTVNLIDRFLSASLIKKQKLQLLGVTCMLISSKYEEIKAPQVKEFCVITDNAYTKAEVLKMESEVLKLLHFQLSVPTTKTFLRRFIKAAQSSYEVGYVELEFLANYLAELTLVEYSFLQFLPSMIAASAVLLARWNLIQSEHPWNPTMEHYTNYKVSDLKTTVLALADLQLNTNGSSLNAVCEKYKQQKFECVAKLAPKPVQTLFQIQM* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1704 351 CDD CYCLIN 119 208 IPR013763 -
Lan3g1704 351 CDD CYCLIN 216 308 IPR013763 -
Lan3g1704 351 Coils Coil 1 21 - -
Lan3g1704 351 PANTHER CYCLIN-A2-4 56 347 - -
Lan3g1704 351 PANTHER CYCLINS 56 347 IPR039361 -
Lan3g1704 351 Pfam Cyclin, C-terminal domain 218 340 IPR004367 -
Lan3g1704 351 PIRSF Cyclin_A_B_D_E 1 349 IPR039361 -
Lan3g1704 351 SMART Cyclin_C_2 218 341 IPR004367 -
Lan3g1704 351 Pfam Cyclin, N-terminal domain 89 216 IPR006671 -
Lan3g1704 351 ProSitePatterns Cyclins signature. 120 151 IPR006671 -
Lan3g1704 351 Gene3D - 89 337 - -
Lan3g1704 351 SUPERFAMILY Cyclin-like 78 215 IPR036915 -
Lan3g1704 351 SMART cyclin_7 222 310 IPR013763 -
Lan3g1704 351 SMART cyclin_7 125 209 IPR013763 -
Lan3g1704 351 Gene3D - 103 216 - -
Lan3g1704 351 SUPERFAMILY Cyclin-like 217 340 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1704 Lan-Chr3 29576253 29584225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1704 8 347 Core Cell Cycle Gene Families AT5G25380 58.551 4.40e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1704 K06627 - gmx:100777132 468.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g1704 3 29576253 29584225 Lan15g1009 15 19256537 19262009 PCT
Lan3g1704 3 29576253 29584225 Lan14g0793 14 14804132 14809649 PCT
Lan15g1009 15 19256537 19262009 Lan3g1704 3 29576253 29584225 PCT
Lan14g0793 14 14804132 14809649 Lan3g1704 3 29576253 29584225 PCT