Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1650 ATGATGCTTAATACCACTTCACTTTTTCAACCATGGGAAACATGGGTTGCATTGGAGTTAACAGAAGAGAAGCAACAGCTTGAGAGTTGGATGCAAGAGGATGGCAGGGAAGTCTTTTGTCCTATTGTTGGTTGTGGAGCACGCTTGATTTCTATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCAGTTTGTTCAGTGTGTTCCAGAGTCTATCCAACATCGCGTCTTCTCAGCATTCATATATCTGAAGCGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTAGAAGGGTGTGGTTTGAAATTCAAAAGCTACAATAGTAGACAGCAGCATCTAGTTGACAAACATAAATTCCCTACCACATTTGAGTTTTACAAGAAAGCTCGATCATCGAAGAAACACAGGCTGAAGTCCCAACGGAAACAACCTTTTCATAAAGAAGATGCTTCAGGATTGATGGAAGTAGAAAATGCAGCCATAGATGACCTTGCTTCGGCCGTCTCAAAATTGAGCACTTCTGATTCGACTCCTTCATCTATCAGCTTTGGTCACCGCCGCAAAGGTATGACATTTGTCCCTCGATCTGTTCGACATGGAAGTGGATCAAACCCTTGA 651 0.4224 MMLNTTSLFQPWETWVALELTEEKQQLESWMQEDGREVFCPIVGCGARLISMEDFENHYNARHTAVCSVCSRVYPTSRLLSIHISEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYNSRQQHLVDKHKFPTTFEFYKKARSSKKHRLKSQRKQPFHKEDASGLMEVENAAIDDLASAVSKLSTSDSTPSSISFGHRRKGMTFVPRSVRHGSGSNP* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1650 216 MobiDBLite consensus disorder prediction 182 216 - -
Lan3g1650 216 SMART c2h2final6 103 128 IPR013087 -
Lan3g1650 216 SMART c2h2final6 65 88 IPR013087 -
Lan3g1650 216 SMART c2h2final6 38 63 IPR013087 -
Lan3g1650 216 Pfam Zinc finger, C2H2 type 66 88 IPR013087 -
Lan3g1650 216 ProSitePatterns Zinc finger C2H2 type domain signature. 105 128 IPR013087 -
Lan3g1650 216 PANTHER UNCHARACTERIZED 16 210 IPR039258 -
Lan3g1650 216 ProSitePatterns Zinc finger C2H2 type domain signature. 67 88 IPR013087 -
Lan3g1650 216 PANTHER ZINC FINGER PROTEIN 511 16 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1650 Lan-Chr3 28737339 28740009 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1650 16 208 C2H2 Transcription Factor Family AT5G14140 64.039 1.22e-86 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1650 zf-C2H2 0.0067 CL0361