Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1649 ATGGCTATGGATGTTGAAAGAAATTTGCAATCTGGATTTCAATACTGGAAACCGCTTCTTCGCTCTTTTCGACCCGATTCTCCTTTTTTCTCCACTGGCAATGTCGAACGTGAACTCCTTGCCAAACAGGTTGCATTGGAGTTAACAGAAGAGAAGCAACAGCTTGAGAGTTGGATGCAAGAGGATGGCAGGGAAGTCTTTTGTCCTATTGTTGGTTGTGGAGCACGCTTGATTTCTATGGAGGACTTTGAAAATCACTATAATGCAAGGCATACTGCAGTTTGTTCAGTGTGTTCCAGAGTCTATCCAACATCGCGTCTTCTCAGCATTCATATATCTGAAGCGCATGATTCTTTCTTTCAGGCAAAAGTTGCACGTGGCTATGACATGTATGAATGCTTAGTAGAAGGGTGTGGTTTGAAATTCAAAAGCTACAATAGTAGACAGCAGCATCTAGTTGACAAACATAAATTCCCTACCACATTTGAGTTTTACAAGAAAGCTCGATCATCGAAGAAACACAGGCTGAAGTCCCAACGGAAACAACCTTTTCATAAAGAAGATGCTTCAGGATTGATGGAAGTAGAAAATGCAGCCATAGATGACCTTGCTTCGGCCGTCTCAAAATTGAGCACTTCTGATTCGACTCCTTCATCTATCAGCTTTGGTCACCGCCGCAAAGGTATGACATTTGTCCCTCGATCTGTTCGACATGGAAGTGGATCAAACCCTTGA 735 0.4272 MAMDVERNLQSGFQYWKPLLRSFRPDSPFFSTGNVERELLAKQVALELTEEKQQLESWMQEDGREVFCPIVGCGARLISMEDFENHYNARHTAVCSVCSRVYPTSRLLSIHISEAHDSFFQAKVARGYDMYECLVEGCGLKFKSYNSRQQHLVDKHKFPTTFEFYKKARSSKKHRLKSQRKQPFHKEDASGLMEVENAAIDDLASAVSKLSTSDSTPSSISFGHRRKGMTFVPRSVRHGSGSNP* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1649 244 MobiDBLite consensus disorder prediction 210 244 - -
Lan3g1649 244 Coils Coil 41 61 - -
Lan3g1649 244 Pfam Zinc finger, C2H2 type 94 116 IPR013087 -
Lan3g1649 244 ProSitePatterns Zinc finger C2H2 type domain signature. 133 156 IPR013087 -
Lan3g1649 244 SMART c2h2final6 66 91 IPR013087 -
Lan3g1649 244 SMART c2h2final6 131 156 IPR013087 -
Lan3g1649 244 SMART c2h2final6 93 116 IPR013087 -
Lan3g1649 244 ProSitePatterns Zinc finger C2H2 type domain signature. 95 116 IPR013087 -
Lan3g1649 244 PANTHER ZINC FINGER PROTEIN 511 10 238 - -
Lan3g1649 244 PANTHER UNCHARACTERIZED 10 238 IPR039258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1649 Lan-Chr3 28730176 28735703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1649 1 236 C2H2 Transcription Factor Family AT5G14140 64.228 3.16e-108 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan3g1649 zf-C2H2 0.0079 CL0361