Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1643 ATGGGAAGCGAAGAAGAGAGGGTTCTGGAGAATCAACTGGAGCTTCAATTGCAAGAACAAAGGGATTCCCTCTCTGCTATTGATCATGCTATCCTCTCTGATCCATCCGATCCCGAGCTTCTCGCGGTTCATGAGGAGCTTGTTCAGGCAATAAACGATGCAGAGGAAGGACTTCTTCTCCTAAAACGTGCACGACTATTACAGGAAGCAGATTCAGTGCTGCACAGCATTAATCTGTTTGCTGAAGAAGAGAAAGTAGAGCCCCTAGACCCCACAAATGTCGAACCAGAGCCACTGGAGAAAAGTTGTTATCCCGTTGGATCTAAATGTAGATTTCGCCACATAGATGGGCGTTGGTACAATGGTCAAGTGGCACTATTGGATAATTCCATGGCAAAGGTTTCATTCCTTAATCCTACATCTGAGAATATGCTGATGTGCAAGTTCTTTTTACAACAACGATGTCGGTTTGGTACTAACTGTCGTCTATCACATGGAGTTGATGTTCAATTGTCCTCCCTGAAGAAATATATCCCAACAATCTATAAGCCTTCCCTTGTCGGGTCAAGCATATGGGCAGTCTCAAATGGCAATCCGGGCATTTGGAGGGAAGCTGAGCTTGAGTCTTGGGATGAACAAGCTGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTGTGAAGCTTGGGGCAGAAGAAATGATATTATCTGAGTATGCTGAAGTGAGTGATTTAGAGAGCGATTCCAGCTTCGAACAATCTGATGCTAGTGAATATGAGGAAGAAGAATCACAAGGTTTAGGATTCATGGAGACCACTAACCAACAGAGGGGCATTCAGACTGAGACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTATAGCTTCCAAAATGATGGCTAATATGGGTTATCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGTTAAATCCCATACCAGTGAAAGTCCTACCACCGAAGCAATCCTTAGATCATGCCCTGGGCTCTCACAAAAAAGAGAACACGGAGAAGAAAGGTAAGAAACGGAGCAGAGGTGGTAAGAGAAAACGTGATAAAAAGTTTGCAGAAGCAAGTTCTGCAGCAAAAGAGGAAGAAAATTCGGCATCAGACGTCTTCGCACTAATAAATAATCAGCTGGCAATGCACAATGAAACTTTAAATGGTGGATCGATGAAGAAGCAGCAGCAAAGTAAAGGTTCAGGGGAAGGTAAAAAGGTAGATAGGCGGGTTTTGATTGCTTATGAAGACGACGTGAAGGATTTGAAGGTGCGTGTTGAAAAGCTTGAAGAAATTGTGAACATAAACAGAAAAGAGAAGCTTGTTTTTGAGGCTGCCATGAGAAAATTAATGGAAACCCGCAAGGCTTTAGCAGAGGCTGAAGCAGCTCATGTCTCTGCGTCAAATGCAGTTGATAGCAAAGAAAAAGAGAAGCGTTGGCTTAAGTTCTAG 1485 0.4364 MGSEEERVLENQLELQLQEQRDSLSAIDHAILSDPSDPELLAVHEELVQAINDAEEGLLLLKRARLLQEADSVLHSINLFAEEEKVEPLDPTNVEPEPLEKSCYPVGSKCRFRHIDGRWYNGQVALLDNSMAKVSFLNPTSENMLMCKFFLQQRCRFGTNCRLSHGVDVQLSSLKKYIPTIYKPSLVGSSIWAVSNGNPGIWREAELESWDEQAGVGQVVFRDDGSSVKLGAEEMILSEYAEVSDLESDSSFEQSDASEYEEEESQGLGFMETTNQQRGIQTETAIFAKWENHTRGIASKMMANMGYREGMGLGVTGQGMLNPIPVKVLPPKQSLDHALGSHKKENTEKKGKKRSRGGKRKRDKKFAEASSAAKEEENSASDVFALINNQLAMHNETLNGGSMKKQQQSKGSGEGKKVDRRVLIAYEDDVKDLKVRVEKLEEIVNINRKEKLVFEAAMRKLMETRKALAEAEAAHVSASNAVDSKEKEKRWLKF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1643 494 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Lan3g1643 494 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 1 494 - -
Lan3g1643 494 MobiDBLite consensus disorder prediction 246 267 - -
Lan3g1643 494 SMART G-patch_5 292 338 IPR000467 GO:0003676
Lan3g1643 494 MobiDBLite consensus disorder prediction 347 361 - -
Lan3g1643 494 Pfam G-patch domain 294 336 IPR000467 GO:0003676
Lan3g1643 494 ProSiteProfiles Zinc finger C3H1-type profile. 141 168 IPR000571 GO:0046872
Lan3g1643 494 ProSiteProfiles G-patch domain profile. 294 344 IPR000467 GO:0003676
Lan3g1643 494 Pfam CCCH-type zinc finger 146 166 IPR041367 -
Lan3g1643 494 MobiDBLite consensus disorder prediction 473 494 - -
Lan3g1643 494 Gene3D - 120 178 - -
Lan3g1643 494 MobiDBLite consensus disorder prediction 337 374 - -
Lan3g1643 494 MobiDBLite consensus disorder prediction 252 266 - -
Lan3g1643 494 SMART c3hfinal6 141 167 IPR000571 GO:0046872
Lan3g1643 494 Coils Coil 423 450 - -
Lan3g1643 494 Coils Coil 454 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1643 Lan-Chr3 28577876 28586787 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan3g1643 G-patch 5.8e-12 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1643 - - gmx:100796284 721.85