Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1639 ATGGAATGGGATTGGAAAGAGTTTACTTGGGATTCATCTATGTTGCAGGTTGATAACAATAAGAAGCATGAAGCTGCTTCAGTGAATTCAAAGAGTGTGTTATCATCTCAAGGGTCATTGAAGCAATGGCATAATGGATCACAGAATTTGTGTTGTTTGGTTGATGGATGCAACTTTGATCTCAGTGATTGTAGAAAGTATCATAAGCGTCATAGGGTCTGCGAAAAGCACACCAAAACCCCTGATGTATTGGTAGGGGGTAAGCAGCAGCGATTCTGCCAGCAATGCAGCAGGTTTCATGCACTTGGGGAGTTTGATGATGTCAAGAGGAGTTGCAGGAAACGCCTCGATGGTCATAATAGGCGTCGGAGGAAACCTCAGCCACCATCTCTTTTCATGGCTGCTGAGAAATTTCTGTACAATTACAAAGGGCCTATGATCCTGCAATTTGGTAACCCTCAGACATATAATATGTGGCCTGCCACTGCCAAAACTGGAGCTGAATCTGGTTATGATGATCGCCGACTTTTATATAGAATTGACAAGCATAATAAGCAAGAGAAGGAACATTTTCTCTGGCAAGAAAATGTTCCGAAAGCAAGCAACTGTTATGAAGCAAAGCTTGGAACTTCAATCTCCCAGCCAAATTGTGGTGCCAATGCCATTTCCACACCAGCAAGTGGAAAAAAGTGCATAGGTAAACTATCTTCTGATAACAAACTTGGATCTTTGGACTCAAGTTGTGTTCTCTATCTTCTGTCAACACTTAAAACACAAAACTCAGATTTGAGAATGGTGCAGTCTAGCACCACCTATCCAATACAATCTCCATTTGGATCTGTGAATTTGGATGCTATAGATGAGTACTTGTGCTCCGAAAGGGCGATAGGTAAGCCTATTAGCCCGGTATTTGTGCTTGATGCTAACATAGCCGATCTTCGTTGCGACTCGATGCTGCAAATGGGACCTGGTGGATTGGTGAAAAATGAGGACTCACTTACACTTCCCTCTTTCTGGGAGTAA 1023 0.4272 MEWDWKEFTWDSSMLQVDNNKKHEAASVNSKSVLSSQGSLKQWHNGSQNLCCLVDGCNFDLSDCRKYHKRHRVCEKHTKTPDVLVGGKQQRFCQQCSRFHALGEFDDVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFLYNYKGPMILQFGNPQTYNMWPATAKTGAESGYDDRRLLYRIDKHNKQEKEHFLWQENVPKASNCYEAKLGTSISQPNCGANAISTPASGKKCIGKLSSDNKLGSLDSSCVLYLLSTLKTQNSDLRMVQSSTTYPIQSPFGSVNLDAIDEYLCSERAIGKPISPVFVLDANIADLRCDSMLQMGPGGLVKNEDSLTLPSFWE* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1639 340 Gene3D - 43 113 IPR036893 GO:0003677|GO:0005634
Lan3g1639 340 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 17 340 IPR044817 GO:0003677
Lan3g1639 340 Pfam SBP domain 52 125 IPR004333 GO:0003677
Lan3g1639 340 ProSiteProfiles Zinc finger SBP-type profile. 49 126 IPR004333 GO:0003677
Lan3g1639 340 PANTHER TRANSCRIPTION FACTOR SBP FAMILY-RELATED 17 340 - -
Lan3g1639 340 SUPERFAMILY SBT domain 50 131 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1639 Lan-Chr3 28400952 28403502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1639 52 163 SBP-box Gene Family AT5G50670 58.929 2.87e-41 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lan3g1639 SBP 6.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1639 - - gmx:100798317 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g1097 10 16156693 16159035 Lan3g1639 3 28400952 28403502 LSH