Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1633 ATGGAACAGAGTATCCTAAGCAAATACACTATCCATCACAGCGTTACCAAGAAGCTGGCAAAGCCGAGAAAAGCTTCTAGTAGCAATAACACAGAACCCATAGTTCCTAGAGTGGTTCGTATATCAGTCACTGATCCAGATGCTACTGATTCTTCCAGCGACGAAGAAGGTGTGTCCCAAAATAGGAAAAGAATGAAGCGCTATGTCAACCATATTGATATTGAAACTGTGTCGAAAAAACCGGTTTCCGTCGTAAAGAAACCCGCTTCTGGCCGCACCACCGTTCGCCGTCAACCGGCGAAGACCTTTTCCGGTGTCAACGGTGGGAGAAAGTTCCGTGGTGTGAGGCAACGACCTTGGGGAAAATGGGCTGCAGAAATTCGAGACCCTTTGAGAAGAGTGAGGATCTGGTTAGGTACATATGAAACTGCTGAAGAAGCTGCTATGGTGTATGATAATGCTGCTATTAAGTTTCGTGGCCCTGATGCTTTGACGAATTTCCTCACACCACCGTCAAAGGAAGCTACTGCGGTTGTCGCCGCCGTGAAACCGGTGAGAAAGGTTGTTGTTAATGGTGAAGCTTCCGATTCTAGTTATGATTCCGGCGATGATCAATGTGTGAATCTTTCTTCTCCTACTTCTGTTCTGCAATTCAGAAGCAATGAAGAGGTAATGGAATCTCAAAAGCCTATTCAAACAGAAGAAAATCAAGAAATGTTAGTGGAAGATGTTTTCAGAGAGTGTGAAGGTGAAACAAGTTTTTTTGATGAGATAAGTTTATTTGATGAAACTGGTGAATTTTTTCAACGTCAAATGCCTCTTTGGGACCAAGTTTTTGATCATGAAACACCACAATATCTTGATGATGTGGTTCTATTCGAAGAACAACAACAACAGCCACTGATGATGGATGAAACGACACCGGTTTTGTCGGAAGATGATGTTTTTGACAACTTTAACCTTGTTGACGAGCTTTTTGATTTTGACAAAGCATGTTCTCAACCATCAAGTTTGTGCCAAGTGGAAGATTATTTTGAAGACATTTTATCATCCTCAGATCAACTCGTTGTTCTATGA 1077 0.4225 MEQSILSKYTIHHSVTKKLAKPRKASSSNNTEPIVPRVVRISVTDPDATDSSSDEEGVSQNRKRMKRYVNHIDIETVSKKPVSVVKKPASGRTTVRRQPAKTFSGVNGGRKFRGVRQRPWGKWAAEIRDPLRRVRIWLGTYETAEEAAMVYDNAAIKFRGPDALTNFLTPPSKEATAVVAAVKPVRKVVVNGEASDSSYDSGDDQCVNLSSPTSVLQFRSNEEVMESQKPIQTEENQEMLVEDVFRECEGETSFFDEISLFDETGEFFQRQMPLWDQVFDHETPQYLDDVVLFEEQQQQPLMMDETTPVLSEDDVFDNFNLVDELFDFDKACSQPSSLCQVEDYFEDILSSSDQLVVL* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1633 358 Gene3D AP2/ERF domain 110 169 IPR036955 GO:0003700|GO:0006355
Lan3g1633 358 CDD AP2 111 167 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 PRINTS Ethylene responsive element binding protein signature 112 123 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 PRINTS Ethylene responsive element binding protein signature 134 150 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 MobiDBLite consensus disorder prediction 21 35 - -
Lan3g1633 358 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 6 350 - -
Lan3g1633 358 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 350 - -
Lan3g1633 358 SMART rav1_2 111 174 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 Pfam AP2 domain 111 160 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 MobiDBLite consensus disorder prediction 17 65 - -
Lan3g1633 358 ProSiteProfiles AP2/ERF domain profile. 111 168 IPR001471 GO:0003700|GO:0006355
Lan3g1633 358 SUPERFAMILY DNA-binding domain 111 168 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1633 Lan-Chr3 28238719 28240343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1633 8 299 AP2-EREBP Transcription Factor Family AT4G27950 40.323 2.16e-51 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan3g1633 AP2 9.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1633 - - lang:109327510 494.967
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0718 15 16048125 16049641 Lan3g1633 3 28238719 28240343 LSH