Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1616 ATGGTGTATTCTTCTTCAGTTACTGGTTCAACATGTGAGGACACCAAGACTTGTCCTCGTGGTCATTGGAGACCGGCTGAGGATGAAAAACTCAGGCAACTTGTTGAACAATTTGGTGCCCAGAATTGGAATTCAATTGCTCAAAAGCTACAAGGAAGATCAGGTAAAAGCTGTAGATTAAGGTGGTTCAATCAACTAGATCCAAGAATTAACAGAAGGCCATTCACAGAAGAGGAAGAAGAGAAGCTACTTGCAGCACATCGCTTTCATGGTAACAAATGGGCACTAATAGCAAGGGTTTTCCCTGGTAGAACTGATAATGCAGTGAAGAATCATTGGCATGTTATAATGGCTAGAAGGCAAAGAGAACAATCTAAGTTATGTGGCAAGAGAAGTTTCCAAGAACTATACAATGATTCCAACACTTCTTCCTCCAACAATAATATTAATATCTTCTCTGAATCAAAAAGACCAAAATCTCATCAAGACTTGTTGTTTAACTCAAGAATTGGATTAGAGAATGCAAGATTCTTTGACTTCAAGAACCTTGATACTCCCTCTAGTTCTCTAGCAACTTGGAATTTTGCATCATCTTTCACAATTTCAACCACCACAAACACTAGTAATAGTACTACTCTTGTAGCTGATTCATTTAGAAAAGGAGGGAAAGATGTTTATTTCAATAGTTCTAGTGTTTATCTCCCACAATGTTCAAAAAGCTCAGATAGATTTCTTTACAGAATATATCCAAATCCTACTGCTACAACTAAATCCTTTGGTAGCTTTAGAGGCTCTAATTCTACTAACTCGTTCTCTTTTCCAAACTACAATAGGGTTGTTCCAAGTTTTTTTGGATTCATTGGTTCTTCTGATCACAATGGAAAGTTAAAGAGGGACATGAAGAGTTTCTGTGATAACTCATCCACATTCACAGAATTGAAGGCTTCTTCAGAAAAAGAACAAGAAGATGATGAGCCTAATATTGAGCACAAAGAAGTTCCTTTCATTGATTTTCTTGGTGTGGGTGTCTCTTCATCATAA 1041 0.3708 MVYSSSVTGSTCEDTKTCPRGHWRPAEDEKLRQLVEQFGAQNWNSIAQKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEEKLLAAHRFHGNKWALIARVFPGRTDNAVKNHWHVIMARRQREQSKLCGKRSFQELYNDSNTSSSNNNINIFSESKRPKSHQDLLFNSRIGLENARFFDFKNLDTPSSSLATWNFASSFTISTTTNTSNSTTLVADSFRKGGKDVYFNSSSVYLPQCSKSSDRFLYRIYPNPTATTKSFGSFRGSNSTNSFSFPNYNRVVPSFFGFIGSSDHNGKLKRDMKSFCDNSSTFTELKASSEKEQEDDEPNIEHKEVPFIDFLGVGVSSS* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1616 346 Gene3D - 20 71 - -
Lan3g1616 346 Gene3D - 73 150 - -
Lan3g1616 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Lan3g1616 346 SUPERFAMILY Homeodomain-like 19 113 IPR009057 -
Lan3g1616 346 CDD SANT 82 114 IPR001005 -
Lan3g1616 346 Pfam Myb-like DNA-binding domain 23 83 - -
Lan3g1616 346 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 66 IPR017930 -
Lan3g1616 346 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Lan3g1616 346 PANTHER TRANSCRIPTION FACTOR MYB56 10 344 - -
Lan3g1616 346 PANTHER MYB PROTEIN-RELATED 10 344 - -
Lan3g1616 346 CDD SANT 23 64 IPR001005 -
Lan3g1616 346 SMART sant 19 68 IPR001005 -
Lan3g1616 346 SMART sant 71 119 IPR001005 -
Lan3g1616 346 ProSiteProfiles Myb-like domain profile. 20 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1616 Lan-Chr3 27976293 27977941 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1616 18 127 MYB Transcription Factor Family AT1G17950 85.455 7.51e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g1616 Myb_DNA-bind_6 1.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1616 K09422 - gmx:100817328 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0577 14 12123363 12124826 Lan3g1616 3 27976293 27977941 LSH