Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1606 ATGATGCAACAGGGTCTCGCCGGAGAAGCCGTCCGCGGTGGCCGGACGGTGGTGGTGGGGATGAAGCTGGATTCTCTGAGCAAAGAGTTATTAACGTGGGCTTTGGTCAAAATTGCTCAACCTGGTGATACTGTTGTTGCTCTGCATGTTCTTGTCAACCATGAAATTGTGAATCTAGATGGGAAATCGTTGTTGATTTCGCTTGTTACAGCGTTTAACCCTGTTCTTGCTGGTTGTGAAGGATTCTGCAATTTGAAACAGGTGGATCTCAAACTGAAAATTTGTAAAGGTTCATCAGTGAAGAAAATTTTGGTTCGGGAAGCGAAAGCTTACGCTGCAACGCATGTTATGGTGGGAATTTCTCAAGTCCACCATAAAATCTGGTCATCTAAATCTGTAGCCAAGTACTGTGCTAGAAAGTTATCCAATGATTGCTGTGTTTTTGCTGTTAACAATGGAAAAGTTGTGTTCAAGCGCATTCGTGATGGCTCACCACCAAATGGTGGTGCTGCTGACTTGCAAGGGATTGATTATCATTACAGAAATGGTTTGCTTGGTTCGGCTCAACAGACACTCGGTAAGAGTTCAGAAGTACTGAGTGATGATACTGCAAGCATGTGTGCTGATAAGGGTGCTGGCAAAATCTCGGATCACAGTTTTGCCAAGGTTTTTCCGGATTCTGCAGAAAATGTTCGAAGACAAAGCTGCTCAGTTTGTGGTTCAACCCTGGCATTGCTAAATACTTCTTCCCACCAATCTGCAGAAGAGTCTTCTGGTGAAGGTGGCAGTGAGAACTCTTTGGCTATAGTGCCTGTAAAGACCACTGATGCAAGTCAACTTGAATTGATACCGGGTTGGCCACTATTACACCAGAAAATTTTGTCAGACAGGCAGCCTCTTCACCTATCACCGCTGCACCAGATATCTGTGGTCCCGTGGGCAATGAGTTTGCCCTGTAGAAGTCTTTCATATTATGCTTATCATGATCATAGATCGAAATTTTTTGATCGAGGTCATGATCATTCTGTGGCATTAGATAGCCAGAGTGGTGCTCTTGTTCCAGTGGATGCTGAGATAGGTACTGCTTATTCTCCTGAACGAAATTCAATAAGCGTTCCAAGAGAATTGGGAAGCCTTCATGATAAATACTCAGCTACTTGCAGATTGTTTGAGTACCGAGAACTTGTTTCAGCAACATCAAATTTCTTGCCTGAAAACTTGATTGGGAAAGGAGGAAGTAGTCGGGTTTATAAAGGCTGCCTTCGCGATGGCAAGGAACTCGCTGTTAAGATCCTGGAGCCTTTTGATAATGTTTTGAATGAGTTTCTCGTGGAAATAGAAATTATCACTACCTTGAATCACAAAAACGTCATTTCCCTGCTCGGGTTCTGCTTTGAGAAGGGCAATCTTCTTCTAGTCTATGATTTCTTATCAAGAGGAAGCCTTGAAGAGAACCTTCATGTAGGGAATAAGAAAAATACACTTGAGTTTGGTTGGACTGAAAGACATAAGGCAGCAATGGGTGTTGCCAAGGCTTTGGAATATCTCCATTGTAAAGATGATCAACCTGTGATCCACCGGGATGTAAAATCATCAAATATATTGTTATCTGAAGATTTTGAACCCCAGCTCTCTGATTTTGGACTGGCTAAATGGGCATCAACATCGTCATCACATATAACATGCACAGATGTTGCAGGAACCTTCGGTTACATGGCTCCTGAATACTTCATGTATGGCAAAGTAACCGATAAGATCGATGTCTTTGCATTCGGTGTCGTGCTCCTTGAACTTCTTTCAGGGAGAAAGCCCATAAGCTGCGATTATCCAAAAGGTCAAGAGAGTCTCGTAATGTGGGCAAGTCCAATTCTAGATAGTGGAAAAGTGTTACAATTGTTAGATCCTAGTTTGGGTGATAACTATGATCATGAAGAAATGGAAAGGATGGTCTTAGCAGCCACACTTTGTATCAGACGTGCTCCGAAAGCTAGGCCTCAAATGAGCCTTGTTTCAAAGCTCCTTCAAGGTGATGCTGATGCAATCGATTGTGCAAGGTTAGAAGTTAATGCTTCAAAAGCACACGAAATACTCGACGACAAATCTTGCCCACCAAGTAATCTACAGTCACTTCTTAATCTTGCACTGCTTGATGTTGAGGACGACTCGCTCTCCATGTGCAGTATTGAGCAGAATGTCTGGTTAGAGGACTACTTGAGAGGCAGGTGGAGCCGCACGGCAAGTTTTGACTGA 2250 0.4329 MMQQGLAGEAVRGGRTVVVGMKLDSLSKELLTWALVKIAQPGDTVVALHVLVNHEIVNLDGKSLLISLVTAFNPVLAGCEGFCNLKQVDLKLKICKGSSVKKILVREAKAYAATHVMVGISQVHHKIWSSKSVAKYCARKLSNDCCVFAVNNGKVVFKRIRDGSPPNGGAADLQGIDYHYRNGLLGSAQQTLGKSSEVLSDDTASMCADKGAGKISDHSFAKVFPDSAENVRRQSCSVCGSTLALLNTSSHQSAEESSGEGGSENSLAIVPVKTTDASQLELIPGWPLLHQKILSDRQPLHLSPLHQISVVPWAMSLPCRSLSYYAYHDHRSKFFDRGHDHSVALDSQSGALVPVDAEIGTAYSPERNSISVPRELGSLHDKYSATCRLFEYRELVSATSNFLPENLIGKGGSSRVYKGCLRDGKELAVKILEPFDNVLNEFLVEIEIITTLNHKNVISLLGFCFEKGNLLLVYDFLSRGSLEENLHVGNKKNTLEFGWTERHKAAMGVAKALEYLHCKDDQPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYMAPEYFMYGKVTDKIDVFAFGVVLLELLSGRKPISCDYPKGQESLVMWASPILDSGKVLQLLDPSLGDNYDHEEMERMVLAATLCIRRAPKARPQMSLVSKLLQGDADAIDCARLEVNASKAHEILDDKSCPPSNLQSLLNLALLDVEDDSLSMCSIEQNVWLEDYLRGRWSRTASFD* 750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1606 749 SMART serkin_6 402 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g1606 749 Pfam Universal stress protein family 15 146 IPR006016 -
Lan3g1606 749 ProSiteProfiles Protein kinase domain profile. 402 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g1606 749 Gene3D Phosphorylase Kinase; domain 1 373 476 - -
Lan3g1606 749 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Lan3g1606 749 Pfam Protein kinase domain 406 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g1606 749 SUPERFAMILY Protein kinase-like (PK-like) 383 673 IPR011009 -
Lan3g1606 749 Gene3D Transferase(Phosphotransferase) domain 1 477 696 - -
Lan3g1606 749 PANTHER - 6 732 - -
Lan3g1606 749 ProSitePatterns Protein kinases ATP-binding region signature. 408 430 IPR017441 GO:0005524
Lan3g1606 749 PANTHER OS08G0249100 PROTEIN 6 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1606 Lan-Chr3 27786779 27790391 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1606 389 670 Trihelix Transcription Factor Family AT1G68690 47.038 8.96e-73 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lan3g1606 Pkinase 1.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1606 - - aprc:113846853 1003.43