Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1597 ATGGATGAAGAGGGAAAACAATCTTCACACAAAACACCATACACTGAATTTGACCAAGTTAGGGATGATTTTATTCTAGCAACTAGCTTGCAAGAACAAGAGGGAACCTTGTCAACACTAGCAACGATTGAAAGTGAAAGTGAAACCGATGAATATGTAAGCGACTCCTCTTTTGATGATGACGACGATGATGCTGATTTTTCGGAAAGCCAAGAGTTTGACGCCTTTCTTGAAGGTGAAGGAAGCAACTATGATGAAGATATGGAAATGGAAGAAGATGAGATTGACCCAGATGAATTATCTTATGAAGAATTACTTGAGTTAGGAGAGTTTATAGGAGAAGAGAAGAAAGGTTTATCTAAAAATGAAATCTGTTCATTCTTATACCCTAATATTTACCAATCTGGTGCAAGTAAAAGTGGAATAGACAAGTGTGTGATTTGTCAGGTTGAATATGAAAAAGGTGAAGCCCTAGTGGCACTTCAATGTAACCACCCTTACCATAAGGATTGCATAACAAAGTGGCTTCAAGTTAAGAAGGTTTGTCCAATATGTAGCAATGAAGTTTCAGCTCCCAAGATGGTTTCTAACAACAATGCATGA 603 0.3748 MDEEGKQSSHKTPYTEFDQVRDDFILATSLQEQEGTLSTLATIESESETDEYVSDSSFDDDDDDADFSESQEFDAFLEGEGSNYDEDMEMEEDEIDPDELSYEELLELGEFIGEEKKGLSKNEICSFLYPNIYQSGASKSGIDKCVICQVEYEKGEALVALQCNHPYHKDCITKWLQVKKVCPICSNEVSAPKMVSNNNA* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1597 200 SMART ring_2 145 185 IPR001841 -
Lan3g1597 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 195 IPR013083 -
Lan3g1597 200 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 2 194 IPR045191 GO:0061630
Lan3g1597 200 ProSiteProfiles Zinc finger RING-type profile. 145 186 IPR001841 -
Lan3g1597 200 MobiDBLite consensus disorder prediction 35 67 - -
Lan3g1597 200 Pfam Ring finger domain 143 185 IPR001841 -
Lan3g1597 200 MobiDBLite consensus disorder prediction 48 67 - -
Lan3g1597 200 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 2 194 - -
Lan3g1597 200 SUPERFAMILY RING/U-box 144 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1597 Lan-Chr3 27597528 27598545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1597 92 189 C3H Transcription Factor Family AT3G63530 47.525 3.00e-28 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1597 K19045 - gmx:100526881 216.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0796 15 17120030 17121129 Lan3g1597 3 27597528 27598545 LSH