Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1587 ATGGTTAAGAAAGAGCTCAAGATCCACACAGAGCCATTATCAAAGGAAATGCCATCTTTGTCCTCATCAACAGATAGCAGCAAGAAGAAGAAGTACAAGGGAGTTAGAATGAGAACTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCTTATTCAACAGCTGAAGCAGCAGCTAGAGCCTATGATGCTGCACTTTTATGCCTTAAAGGGTCTTCAGCAAATTTCAATTTTCCATTAACTTGTTCTAAACATTATATTCCTCAAGATACGGTTTTGTCTCCTAAATCAATTCAAAGAGTTGCTGCAGCTGCAGCTAATAGTTTCATTCATGAAAATGATCTTGTTGCATCAACTTCTTCATCATCAGTGTCTTCTTCATCTACTTTAGATCAAATCAATGATGATGTTTCACTATTGTCATCTTTTGAATATGATCAAGAAACAAATGAGTCAATGGCTTTGAATATGATGGAACCTTGGTACACCTTTGATGGCCTTAGTCCATTCTTTGATATTGATTCATCTCAGATAATTGATGATTTCTATGAAGAAAGTGATATTCGTTTGTGGAACTTCTGTTGA 612 0.3595 MVKKELKIHTEPLSKEMPSLSSSTDSSKKKKYKGVRMRTWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANFNFPLTCSKHYIPQDTVLSPKSIQRVAAAAANSFIHENDLVASTSSSSVSSSSTLDQINDDVSLLSSFEYDQETNESMALNMMEPWYTFDGLSPFFDIDSSQIIDDFYEESDIRLWNFC* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1587 203 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Lan3g1587 203 Pfam AP2 domain 31 80 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 MobiDBLite consensus disorder prediction 1 31 - -
Lan3g1587 203 CDD AP2 34 88 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 Gene3D AP2/ERF domain 30 90 IPR036955 GO:0003700|GO:0006355
Lan3g1587 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 13 203 - -
Lan3g1587 203 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
Lan3g1587 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1587 Lan-Chr3 27503420 27504364 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1587 1 202 AP2-EREBP Transcription Factor Family AT1G21910 48.945 4.59e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan3g1587 AP2 3.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1587 - - gmx:100819512 240.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0805 15 17212594 17213624 Lan3g1587 3 27503420 27504364 LSH