Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1585 ATGCGGCGTCAATTATCAACAAACCCACCCCTTCCTCCGCCGTCTCCTCCGTCGCAACCTTCCCCTATCGACGCCGCTATTTGGCGTGCCTGCGCCGGAGCTTCTGCTCAAATCCCAACCGTTAATTCTAGGGTTTACTATTTCCTTCAAGGTCATATTGATCAAGCTTCTTCCACACCGAAAAAACTATCACCTAATGTCTATTCTACTCCCTACGTTCTTGCTCGAATCGTTGAAGTTCAATTCCTCGCTGATCATAACACTGACGAGGTTTTCGTTAAACTCGTTCTTCAGCCTATCAATCGTGGTTCTGTTTCTCAGTTTCTTCTCACTCCTCGGCGAACGGATAGTGCTGGTGAAAATAGAAATGGTTCCGGTGACGGTGATGAAAACGCTGTCGTTTCGTTCGCTAAGATTCTGACGCCTTCTGATGCTAACAATGGTGGTGGTTTCTCTGTTCCGAGGTTCTGTGCTGATTCGATTTTCCCGCCGCTGAATTTCCAGGAAGATCCGCCGCTTCAGAATCTGAGGGTGATTGATATCCATGGCATTGTGTGGGAGTTTCGCCACATTTACCGTGGGACGCCTCGGCGCCACCTGCTCACTACTGGTTGGAGCAAGTTTGTCAACTTCAAGAACCTCGTCGCGGGGGATTCTGTTGTTTTCGTGAAGAATTCGAAGGGTGAGTTATTCGCTGGAGTTCGCCGTGCCAAGCGGTCTTCCTCAAGGGGCTGTGGAGGAGGTGGCAATGGCACTGACTGGTGCGCGATGATGCTCAGTGTTGGTGGGGTGAGGAAAAGGGATGAGGAAGGGGAGAAGAAGAAGCAGGAGGAGAAGGTGGTGAAGGAAGGGTTTTCGAGGAACGGGAAGGGGAGATTGGAGCCTGAGAAGGTTGCTGAGGCGGCTGAATTGGCAGTGCGGGGAATGCCTTTTGAGGTTGTGTATTATCCGAGTACTGGGTGGTCGGATTTTGTGGTGAAGGCGGAGATTGTGGATGAAGCGAGCAGGGTTATGTGGAGCCCTGGAATGAGAGTAAAGATGGCTGTGGAGACTGAGGATTCATCTAGGATGAGCTGGTTTCAGGGCACAGTGTCTGCTGTGTGTGTTCCTGAGAATGGGCAGTGGCAAGGTTCTCCTTGGCACATGCTTCAGGTTGCATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCTGGTCAGCCCTTGGCAGGTTGAACTTGTGTCTGCCACACCTGCACTTCATACAGCATTCACCCCACCCAAAAGATTTAGAGCTGCCCATGGTTCTTTGGTTTTAACTGATGGTGAGGGAGACCCTTTCTTTCCTATGACAGGATACTCTAATTCAACAATGGGACAGTTAAATCGGACATTGTCGAGTTATGGTACATTTCCTGCGGGCATGCAGGGAGCCAGGCATGATTTTTTTTCTACACTTGATGTTTACAATTTTTCTGGTAATATGTCTCGTCTGTATTTTGCAAATTCCTTTGGGAACAACTCAGCACCAAGCTTGAATACTTTGTCAACAGAGCTAAATATTGGTAGCTCTCAATCTGACAACTTGTCACCAGATAGCCAGGGTAGTTTGCATTCCTTTGGCATAGAATTTTTTGGGGCCCACAACTGCAAGTCAACAAAAGCTGGGTCTGGTTCAATTCAGCTATTTGGTGCCACCATTGAAACAAAACAGCCTATTGAAAGTGTTTTGCATCTTCCTTGTTACACAAGTCATGATAGCTCTAAGGGTTGCACTGAAATTAAAGTCATGGACAAGCTGGAATATTCTTTGGGTTATTCAAAAATGCTAGACAGGCTTGACGACGGCCTTGATGATGGTCAATGCAATTTGTGA 1854 0.4795 MRRQLSTNPPLPPPSPPSQPSPIDAAIWRACAGASAQIPTVNSRVYYFLQGHIDQASSTPKKLSPNVYSTPYVLARIVEVQFLADHNTDEVFVKLVLQPINRGSVSQFLLTPRRTDSAGENRNGSGDGDENAVVSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFQEDPPLQNLRVIDIHGIVWEFRHIYRGTPRRHLLTTGWSKFVNFKNLVAGDSVVFVKNSKGELFAGVRRAKRSSSRGCGGGGNGTDWCAMMLSVGGVRKRDEEGEKKKQEEKVVKEGFSRNGKGRLEPEKVAEAAELAVRGMPFEVVYYPSTGWSDFVVKAEIVDEASRVMWSPGMRVKMAVETEDSSRMSWFQGTVSAVCVPENGQWQGSPWHMLQVAWDEPEVLQNAKLVSPWQVELVSATPALHTAFTPPKRFRAAHGSLVLTDGEGDPFFPMTGYSNSTMGQLNRTLSSYGTFPAGMQGARHDFFSTLDVYNFSGNMSRLYFANSFGNNSAPSLNTLSTELNIGSSQSDNLSPDSQGSLHSFGIEFFGAHNCKSTKAGSGSIQLFGATIETKQPIESVLHLPCYTSHDSSKGCTEIKVMDKLEYSLGYSKMLDRLDDGLDDGQCNL* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1585 617 Pfam B3 DNA binding domain 136 237 IPR003340 GO:0003677
Lan3g1585 617 Gene3D - 133 238 IPR015300 -
Lan3g1585 617 ProSiteProfiles B3 DNA-binding domain profile. 136 238 IPR003340 GO:0003677
Lan3g1585 617 MobiDBLite consensus disorder prediction 7 21 - -
Lan3g1585 617 Pfam Auxin response factor 301 384 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lan3g1585 617 CDD B3_DNA 135 231 IPR003340 GO:0003677
Lan3g1585 617 PANTHER AUXIN RESPONSE FACTOR 16 608 - -
Lan3g1585 617 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 608 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lan3g1585 617 MobiDBLite consensus disorder prediction 1 22 - -
Lan3g1585 617 SMART B3_2 136 238 IPR003340 GO:0003677
Lan3g1585 617 SUPERFAMILY DNA-binding pseudobarrel domain 131 240 IPR015300 -
Lan3g1585 617 Gene3D - 339 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1585 Lan-Chr3 27467391 27471413 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1585 23 568 B3 DNA Binding Superfamily AT1G77850 49.550 1.10e-163 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lan3g1585 B3 2.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1585 - - lang:109326149 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0632 14 13265071 13269185 Lan3g1585 3 27467391 27471413 LSH
Lan2g0907 2 19662338 19666695 Lan3g1585 3 27467391 27471413 PCT
Lan3g1585 3 27467391 27471413 Lan2g0907 2 19662338 19666695 PCT