Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1582 ATGGATGATACCCATCCGGAACGAAATAGCAACACACAAACCGATCATTATCCTTTGCTAATGGAGCAGCTGGAAACCCGCAATGTTCATGAGCACATAATTGATATTACAAGGAATGATGAAGTTTCATCAAGCTCATCTCATAATGATCAACACCCTGGAATGCATATACCACAGAATGATGATGAACAAAATGGCAGCACACAACTCTCGACTCATCAAAGATCTTATTTTTCTGCATCCAGATATAATTCTAGAAATTCCTCGTCACCAAGAAGTGAGGAGTATGGCCATCTCAGAAGGAACCCTCTAAATTCTGGACTGTGGATTTCTGTGGAGCTTGCTGTCACTCTGAGTCAAATCATAGCATCTATTGTTGTCTTGTCATTATCCAGAAATGAAAACCCTCAAGCACCATTATTTCTGTGGATTCTGGGTTATACATCTGGTTGTGTTGCTACGCTTCCTATTCTTTACTGGCGATATCGATACCCTAATCAAAGTATTGTAGAAGATACCTCTCAACCATTTCAAGGATCTTTTGAAAGAAACCCTTCAGAACCTTCTTCATATACTGCCATCTCTGTTGCTCATGTTTCAAATGAAGAGAATAGTCGTGCTACAGAATCAGCTACAAGAAGTGCTAGAATTCCTGAACCCTTCAGTTCAAGGTTTGGTGGATTAGTAGAGCATTTCAAGATGGTATTGGATTGTTTTTTTGCAGTTTGGTTTGTTGTAGGCAATGTGTGGATCTTTGGAGGTCAAACTTCTCCTTCTGATGCTCCAAAATTGTATAGGTTATGTATAGTCTTTCTTACCTTCAGCTGCATCGGATATGCCTTGCCATTTATACTGTGTGCAACAATTTGTTGCTGCCTACCTTGCATAATTTCTATTTTGGGCATTCAGGAGGATTTTTCTCAAAATAGAGGAGCATCAGCCGTATGTATTAATGCTCTGCCGATCTACAAGTTCAAAATGAAGGAAAATGAAAACAGTGGTGTTCAGGATGTCAATACAGAAGGTGGACTTCTGGCTTCCGGAACAGAAAAGGAACGGTTGATATCTAGAGAGGATGCCGTTTGTTGCATTTGCTTGGCAAAATATGTAGATGATGACGAGCTTCGGGAGTTACCTTGCATTCATGTCTTTCATGTCGAGTGCATCGACAAATGGTTAAAGATAAATGCATCATGTCCTCTTTGTAAAAGTGAAGTTGGTACAAGTAATGAACAGTCAACTTCAGCCACGGATTCCAGCGTCAGCAATAGATGA 1275 0.4008 MDDTHPERNSNTQTDHYPLLMEQLETRNVHEHIIDITRNDEVSSSSSHNDQHPGMHIPQNDDEQNGSTQLSTHQRSYFSASRYNSRNSSSPRSEEYGHLRRNPLNSGLWISVELAVTLSQIIASIVVLSLSRNENPQAPLFLWILGYTSGCVATLPILYWRYRYPNQSIVEDTSQPFQGSFERNPSEPSSYTAISVAHVSNEENSRATESATRSARIPEPFSSRFGGLVEHFKMVLDCFFAVWFVVGNVWIFGGQTSPSDAPKLYRLCIVFLTFSCIGYALPFILCATICCCLPCIISILGIQEDFSQNRGASAVCINALPIYKFKMKENENSGVQDVNTEGGLLASGTEKERLISREDAVCCICLAKYVDDDELRELPCIHVFHVECIDKWLKINASCPLCKSEVGTSNEQSTSATDSSVSNR* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1582 424 MobiDBLite consensus disorder prediction 40 98 - -
Lan3g1582 424 SMART ring_2 362 402 IPR001841 -
Lan3g1582 424 SUPERFAMILY RING/U-box 353 408 - -
Lan3g1582 424 PANTHER PROTEIN, PUTATIVE-RELATED 6 417 - -
Lan3g1582 424 CDD RING-H2_RNF111_like 361 403 - -
Lan3g1582 424 Pfam Ring finger domain 362 403 IPR001841 -
Lan3g1582 424 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 346 421 IPR013083 -
Lan3g1582 424 ProSiteProfiles Zinc finger RING-type profile. 362 403 IPR001841 -
Lan3g1582 424 MobiDBLite consensus disorder prediction 40 92 - -
Lan3g1582 424 MobiDBLite consensus disorder prediction 404 424 - -
Lan3g1582 424 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 6 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1582 Lan-Chr3 27428990 27433138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1582 1 414 C3H Transcription Factor Family AT1G80400 55.502 2.84e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1582 - - gmx:100819729 597.045