Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1579 ATGGATATATATGAGCCATTCCAGCAAGTTAACATGTGGGGGGATAACTTTAAAGTTGAAGGAGGCTTGAATTCAATTTCTTCCCCAATGTTACTAGTGAACACTACCATGGAGGCTAAGTCAGAGTATATTCCTCATGAACCAATGGAACCTTGTGGAAATGATCAAGAGAGTACTAGTACTAACAAAGATGTTAGTAAGGTGCTAAGACGCCTAGCGCAGAATCGAGAGGCTGCTAAGAAAAGTCGGCTGCGAAAAAAGGCTTATGTTCAACAATTAGAAACAAGCCGGTTGAAGCTTATGCAATTGGAATTGGAGATTGGGAAAGCAAGAAAGCAGGGTATGTACATTGGTGGTACTACATTTGATGCTAGTTATATGGGATCTCATGGAACATTACTTTTGCACCCAGGGATCGTTGCATTTGAAATTGAATATGGAAATTGGGTTACAGAACAGCATAGGTGGAACGAAGAACTTAGAAATGCATTTCAAACTAATGCATCGGATGTTCAGCTCCATATACTTGTTAAGAGTGTCTTGAACCATTACTCAAACCTTTTCAGAATGAAAGCAGATGCTGCAAAGCTTGATGTCTTCTACTTAATTTCTGGTGTGTGGAAAGCATCGGTCGAGCGCATTTTCCTTTGGATTGGAGGATCGCGCCCGTCACAGCTTCTAAATATCATTGTGCCACAACTTGAGCCTTTGAATGATCAACAAATGGCTAGTATTCACAATCTCCGTTTATCATCTCAGCAAGCTGAAGATGCACTTTCACAGGGATTAGATAAACTTCAGCAAAGTATGGTTCACAACATAGTAGTTGATCAGTTAGGTGTAGGAAACTTCGAGTTTCAGATGGCCATTGCCATGGAGAAAATTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGATCACCTTAGGCAACAAACATTGCTTTATATGTCAAGGATCCTAACAACACACCAAGCTGCACAAGGATTATTGGCTCTAGGAGAATACTTACACCGTCTTCGTGCTCTTAGTTCTCTTTGGGCTAATCGTTCATGTGATTCTACCTAG 1065 0.4075 MDIYEPFQQVNMWGDNFKVEGGLNSISSPMLLVNTTMEAKSEYIPHEPMEPCGNDQESTSTNKDVSKVLRRLAQNREAAKKSRLRKKAYVQQLETSRLKLMQLELEIGKARKQGMYIGGTTFDASYMGSHGTLLLHPGIVAFEIEYGNWVTEQHRWNEELRNAFQTNASDVQLHILVKSVLNHYSNLFRMKADAAKLDVFYLISGVWKASVERIFLWIGGSRPSQLLNIIVPQLEPLNDQQMASIHNLRLSSQQAEDALSQGLDKLQQSMVHNIVVDQLGVGNFEFQMAIAMEKIEALEGFVNQADHLRQQTLLYMSRILTTHQAAQGLLALGEYLHRLRALSSLWANRSCDST* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1579 354 Coils Coil 86 113 - -
Lan3g1579 354 PANTHER TRANSCRIPTION FACTOR TGA9 1 350 - -
Lan3g1579 354 ProSiteProfiles DOG1 domain profile. 139 349 IPR025422 GO:0006351|GO:0043565
Lan3g1579 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 70 85 IPR004827 GO:0003700|GO:0006355
Lan3g1579 354 SUPERFAMILY Leucine zipper domain 67 100 IPR046347 GO:0003700|GO:0006355
Lan3g1579 354 Pfam bZIP transcription factor 67 95 IPR004827 GO:0003700|GO:0006355
Lan3g1579 354 PANTHER FACTOR TGA7, PUTATIVE-RELATED 1 350 - -
Lan3g1579 354 Gene3D - 66 114 - -
Lan3g1579 354 SMART brlzneu 63 123 IPR004827 GO:0003700|GO:0006355
Lan3g1579 354 Pfam Seed dormancy control 158 231 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1579 Lan-Chr3 27417423 27421300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1579 1 354 Calmodulin-binding Proteins AT1G77920 53.678 9.64e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan3g1579 DOG1 1.3e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1579 K14431 - gmx:100794268 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0830 15 17465302 17468669 Lan3g1579 3 27417423 27421300 LSH
Lan11g0490 11 3765739 3768975 Lan3g1579 3 27417423 27421300 PCT
Lan3g1579 3 27417423 27421300 Lan11g0490 11 3765739 3768975 PCT