Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1576 ATGGGTCGTGTTAAATTGGAGATAAAGAGAATAGAGAACACCACAAATCGACAAGTTACATTCTCAAAGCGTAGAAATGGCCTCATCAAGAAAGCTTATGAATTATCCATCTTATGTGACATTGATATTGCCCTTATCATGTTCTCTCCTTCTGGTCGTCTCAACCATTTTTCAGGCAGAAGAAGGATCGAGGATGTTTTTACTCGTTTCATCAACCTTCCTGATCAAGAAAGAGATAACGCTGTAAATTTTCCTGAGCCACACTATGACAGGGGGATCCAGAACAAGGAGTATTTGCTTAGGACCCTTCAACAACTAAGGAGTGAAAATGACATAGCTCTTCAACTGGTCAATCCGGGAGACATTAACTGTGAGATTGAGGAACTACAACAAGAAGTTAACAGGTTACATCAACAACTTCAAATGACCGAGGCACAAATAAGGATATATGAACCCGACCCATCGAAGATGACATCTATGGAGGATCTTGAATCTACTGAAAAGAACCTCGTAGATACATTGACACGTGTTATGCAAAGAAAGGAATGTTTGCTGAGCAACCATCTTCCTACGTATGATACATCTACTATTCAGGGAATCCCTTCAACTTTCGAAAGTGTAGGGTGGTTGCAAGATGGCAACCAGAACCATCAACACATATTTGATGCATCTAATCCTTTGGACCCTCTCAGGGATCTATCATCCACGGTTTATGATCCATTTTCACAAGGAACAAGTTCACATGCAGAAGCACGAAGTAATGGAGAGTGCCATGTAACAAATCCAAGTGATGCATGGCCACAAGGATACACATTTTATCCTCATATGCAACATAACATGGTGGGAACAGACATGCAAAATATGATGCAACATGGGCAATTGAATGTTTCAATCACTACCCCACAAATGCAACAACCACCCAAGAATGAAAGTGCAAGTGGAAGTGCAGAATATGAGTGTAATTCTCATCATCAACTTAACGCTCAATGA 990 0.4051 MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLNHFSGRRRIEDVFTRFINLPDQERDNAVNFPEPHYDRGIQNKEYLLRTLQQLRSENDIALQLVNPGDINCEIEELQQEVNRLHQQLQMTEAQIRIYEPDPSKMTSMEDLESTEKNLVDTLTRVMQRKECLLSNHLPTYDTSTIQGIPSTFESVGWLQDGNQNHQHIFDASNPLDPLRDLSSTVYDPFSQGTSSHAEARSNGECHVTNPSDAWPQGYTFYPHMQHNMVGTDMQNMMQHGQLNVSITTPQMQQPPKNESASGSAEYECNSHHQLNAQ* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1576 329 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 286 - -
Lan3g1576 329 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Lan3g1576 329 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Lan3g1576 329 Coils Coil 126 146 - -
Lan3g1576 329 MobiDBLite consensus disorder prediction 300 329 - -
Lan3g1576 329 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Lan3g1576 329 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 286 - -
Lan3g1576 329 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan3g1576 329 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1576 Lan-Chr3 27350162 27355232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1576 1 304 Type I MADS-box Gene Family AT1G22130 57.098 5.69e-116 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan3g1576 SRF-TF 1.2e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1576 - - adu:107460753 514.612