Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1575 ATGGATTCATTGGCCACTAAAGAAACCAGAATGAGAATCATTGAGCCTCAGCACCATGATTTTGAAGATACTACTGATCAAACAGAAAGGTCCCAGTCACACTTGGTGCTGAACTATCCCAAACCACCACCTTTATGGAAGAAGCTACTCAATCCAGTGAAGGATACCAAGTTCTTCTTTTCGTTCAAGAACAAAACTTGTCATGGACATGCTTTTTCATTCTTAGAGAGTTTATTTCCAATCATTAACTGGTCCAGAAATTACAAAGCTTCCATGCTTAAAGATGATTTGCTAGCAGGTTTAACTATTGCCAGCCTTAGCATACCTCAGAGCATAGGATATGCTAATTTAGCAAAACTTGATCCTCAATATGGACTGTATACTACTGTTGTTCCTCCAATTATCTATGCTGTGATGGGTACCTCAAGAGAAGTTGCAATTGGACCTGTAGCTATAATATCATTGCTGATATCCTCTCAGGTTTCCACACTGATAAATCCTGCTTCCAATCCTGAGGCCTATAGAAATTTTGTTTTTACAGTAACCTTTTTCGCTGGAATCTTTCAAGCTGCATTCGGAATTTTCAGGTTGGGTTTTCTTGTGGATTTTCTTTCACATGCTGCCCTTGTAGGGTTCATGGCAGGTGCAGCCATCATTATTGGTCTTCAACAGCTGAAAGGGTTTTTGGGGCTAACTCAGTTTACCACCAATACCGATGTGATATCTGTCTTTGAATCTGTTTATAAGTCACTTTATCAACAAATTACATCAGCAGAAAAATGGTCCCCTCTGAATGTTATCATCGGGTGTTCATTCCTGATTTTCCTTTTACTTGTTCGTTTCTTTGGAAGAAGAAACAAGAAACTTTTCTGGTTACCTGCTATTGCTCCTCTTATATCAGTTGTATTATCAACCCTAATAGTGTACTTGTCAAAAGCTGATAAGCATGGGGTTTATATAGTAAAGCACATCAAAAGTGGTCTGAATCCAAGTTCAGTTCATCAGTTACAATTCCATGGCCAACATGTTGGAGAAGCAGCTAAGATTGGATTGATTTGTGGCATTATTGCTCTCGCTGAAAAAATAGCTGTTGGTAGATCTTTTGCTTCCCTTAAGGGATACCATCTTGATGGGAACAAAGAAATGTTAGCTATGGGCTGCATGAACATTGCAGGATCTTTAACTTCATGCTATCTGGCAACCGGTTCTTTGTCAAGGACTGCAGTAAATGTGAGTGCTGGATGTAAAACATCATTATCAAATATTGTAATGGCAATAACTGTGATTGTGTGCCTGGAATTGCTTACAAGGCTCTTATATTACACTCCTATGGCCATACTTGCTTCTGTAATAATCTCTTCACTTCCTGGTTTAATTAACATAAGTGAAGCCTGCCATATCTGGAAGGTGGACAAATTTGATTTTCTTGCATATGCTGGTGCTTTCTTTGGAGTCATGTTTGGATCAGTAGAGATAGGTCTTCTAATTGCTGTGTTAATCTCATTTACAAAGATAATAATACAAACAATTCGACCAGGCATAGAAATTCTGGGCAGAGTTCCAAGAACAGAAGCATTTTGTAATGTTATTCAGTATCCTATGGCTATAAGCACTCCAGGCATCTTAGTGATTCGGATAAGCTCTGGCTCACTGTGCTTTGCAAATGCTAATTTTGTTAGAGAAAGAATACTAAAGTTGATCACTAATGAAGAAGATGAATTAAACGAAACTGCTAAGGGAAAAGTCCAAGCAGCAATCTTGGACATGACCAACCTAATGAATGTTGACACTTCTGGAATTCTAGCATTGGAGGAATTGCACATGAGTTTGCATAGTCGTGGCATAGAATTGGCTATGGTCAACCCAAGGTGGCAAGTAATTCACAAACTTAAACTAGCACACTTTGTGGACAGAATTGGAAAAGAATTAGTTTTCCTTACAGTTGCTGAAGCTATAGATGCATGTCTGGCTTCTAAAATTACCACCCTTCACTTTGAAGGTATTGTCTAG 2010 0.3861 MDSLATKETRMRIIEPQHHDFEDTTDQTERSQSHLVLNYPKPPPLWKKLLNPVKDTKFFFSFKNKTCHGHAFSFLESLFPIINWSRNYKASMLKDDLLAGLTIASLSIPQSIGYANLAKLDPQYGLYTTVVPPIIYAVMGTSREVAIGPVAIISLLISSQVSTLINPASNPEAYRNFVFTVTFFAGIFQAAFGIFRLGFLVDFLSHAALVGFMAGAAIIIGLQQLKGFLGLTQFTTNTDVISVFESVYKSLYQQITSAEKWSPLNVIIGCSFLIFLLLVRFFGRRNKKLFWLPAIAPLISVVLSTLIVYLSKADKHGVYIVKHIKSGLNPSSVHQLQFHGQHVGEAAKIGLICGIIALAEKIAVGRSFASLKGYHLDGNKEMLAMGCMNIAGSLTSCYLATGSLSRTAVNVSAGCKTSLSNIVMAITVIVCLELLTRLLYYTPMAILASVIISSLPGLINISEACHIWKVDKFDFLAYAGAFFGVMFGSVEIGLLIAVLISFTKIIIQTIRPGIEILGRVPRTEAFCNVIQYPMAISTPGILVIRISSGSLCFANANFVRERILKLITNEEDELNETAKGKVQAAILDMTNLMNVDTSGILALEELHMSLHSRGIELAMVNPRWQVIHKLKLAHFVDRIGKELVFLTVAEAIDACLASKITTLHFEGIV* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1575 669 CDD STAS_SulP_like_sulfate_transporter 532 648 - -
Lan3g1575 669 ProSitePatterns SLC26A transporters signature. 122 143 IPR018045 GO:0008271|GO:0008272
Lan3g1575 669 PANTHER SLC26A/SULP TRANSPORTER-RELATED 22 661 - -
Lan3g1575 669 SUPERFAMILY SpoIIaa-like 537 655 IPR036513 -
Lan3g1575 669 TIGRFAM sulP: sulfate permease 80 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan3g1575 669 Pfam STAS domain 532 651 IPR002645 -
Lan3g1575 669 PANTHER SULFATE TRANSPORTER 22 661 IPR001902 GO:0015301|GO:0016020|GO:0055085
Lan3g1575 669 ProSiteProfiles STAS domain profile. 548 655 IPR002645 -
Lan3g1575 669 Gene3D STAS domain 511 658 IPR036513 -
Lan3g1575 669 Pfam Sulfate permease family 93 479 IPR011547 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1575 Lan-Chr3 27340988 27347428 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1575 26 660 Inorganic Solute Cotransporters AT5G10180 62.773 0.0 817
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1575 K17469 - gmx:100805269 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0834 15 17538526 17544240 Lan3g1575 3 27340988 27347428 LSH
Lan11g0481 11 3677579 3681472 Lan3g1575 3 27340988 27347428 PCT
Lan9g1107 9 18444225 18448285 Lan3g1575 3 27340988 27347428 PCT
Lan3g1575 3 27340988 27347428 Lan11g0481 11 3677579 3681472 PCT
Lan3g1575 3 27340988 27347428 Lan9g1107 9 18444225 18448285 PCT