Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan3g1564 | ATGGGAAGGTCACCATGCTGTGATGAGATTGGCCTTAAGAAGGGACCCTGGACTCTTGAGGAAGATCAAAAGCTTATCCACCACATTCAAGAACATGGTCATGGAAGTTGGAGAGCACTTCCTAAGCTAGCTGGTCTGAACAGATGTGGGAAAAGTTGTAGGCTAAGGTGGACCAACTATTTAAGGCCTGATATCAAGAGGGGAAAGTTTTCAAAAGAAGAGGAGCAAACAATTCTGCATCTCCATTCCATCCTTGGAAACAAGTGGTCAGCAATTGCAACCCATCTTCCAGGAAGAACTGATAATGAGATCAAGAATTTCTGGAACACTCATTTAAGGAAAAAGTTGATTCAAATGGGTTTTGATCCAATGACTCATCAGCCAAGAACTGACCTTGTTTCCACCTTGCCATATCTGCTAGCTTTGGCCAACATGGCAGACATTATGGATCATAATCAATCATTGGATGAACATGCTCTTAGGTTACAAGCAGAGGCAGTTCAGCTAGCCAAGCTTCAATACCTTCATTTTTTACTCCAATCTTCAAATTCCTCAACTACAAATAATCTCTCAATGAAAGAGCATAATACAGTTATGGAGTTGACACAAGTGGATAATAATAATAATAATAATAACCCAAACTCATTTTCTCATGGGATTATTGCTGGCTTTGGCTCTCAACCACTCCACCACCAAAACAATATGCTATATGACTTTTTAGACCCACAAGTCTCTTTCAATTCACAATCATTTTTGAATAATGAGCAAGGTCAAGGTACTAACTATGCAATCATAAGTCAAGGGGGTCACACTACATTTGATCATGCCTCAACTAATTGGATTATTCCATCACCTATTACTCCAAATGCCATGGGGACTTCAATTACTAGCAATCCAGGAGATGCTAGTAGCAGTACTTCAAGCTATGGGGGAGGAATATCATCTTATAATTGGCCTGAATTATTTTTTGAGGACACCATTAAAATGCATGATAGTATTTAA | 1002 | 0.3922 | MGRSPCCDEIGLKKGPWTLEEDQKLIHHIQEHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEQTILHLHSILGNKWSAIATHLPGRTDNEIKNFWNTHLRKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMADIMDHNQSLDEHALRLQAEAVQLAKLQYLHFLLQSSNSSTTNNLSMKEHNTVMELTQVDNNNNNNNPNSFSHGIIAGFGSQPLHHQNNMLYDFLDPQVSFNSQSFLNNEQGQGTNYAIISQGGHTTFDHASTNWIIPSPITPNAMGTSITSNPGDASSSTSSYGGGISSYNWPELFFEDTIKMHDSI* | 334 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan3g1564 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 9 | 61 | IPR017930 | - | |
| Lan3g1564 | 333 | ProSiteProfiles | Myb-like domain profile. | 9 | 61 | IPR001005 | - | |
| Lan3g1564 | 333 | CDD | SANT | 69 | 112 | IPR001005 | - | |
| Lan3g1564 | 333 | ProSiteProfiles | Myb-like domain profile. | 62 | 112 | IPR001005 | - | |
| Lan3g1564 | 333 | CDD | SANT | 16 | 61 | IPR001005 | - | |
| Lan3g1564 | 333 | Pfam | Myb-like DNA-binding domain | 67 | 112 | IPR001005 | - | |
| Lan3g1564 | 333 | Pfam | Myb-like DNA-binding domain | 14 | 61 | IPR001005 | - | |
| Lan3g1564 | 333 | Gene3D | - | 69 | 116 | - | - | |
| Lan3g1564 | 333 | PANTHER | TRANSCRIPTION FACTOR MYB39-LIKE | 1 | 305 | - | - | |
| Lan3g1564 | 333 | SUPERFAMILY | Homeodomain-like | 11 | 108 | IPR009057 | - | |
| Lan3g1564 | 333 | Gene3D | - | 13 | 66 | - | - | |
| Lan3g1564 | 333 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 62 | 116 | IPR017930 | - | |
| Lan3g1564 | 333 | SMART | sant | 66 | 114 | IPR001005 | - | |
| Lan3g1564 | 333 | SMART | sant | 13 | 63 | IPR001005 | - | |
| Lan3g1564 | 333 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR | 1 | 305 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan3g1564 | Lan-Chr3 | 27129684 | 27131653 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan3g1564 | 1 | 327 | MYB Transcription Factor Family | AT1G34670 | 51.374 | 3.26e-114 | 333 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Lan3g1564 | Myb_DNA-binding | 1e-15 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan3g1564 | K09422 | - | gmx:100782792 | 467.233 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan15g0855 | 15 | 17770071 | 17771726 | Lan3g1564 | 3 | 27129684 | 27131653 | LSH | |
| Lan14g0654 | 14 | 13509343 | 13511167 | Lan3g1564 | 3 | 27129684 | 27131653 | LSH |