Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g1541 ATGTACGACCCTATGAACCAGATCGTTGCAATCGACGACAACAATGACACCTCCGCCACCATTCAACCCATCGACGACAACCATCACACCCATATCATTCATTACGAAGACACTAACGACGACGTAAATGAAGATGGTTCAACCGATAATAGGGTTTATGTTTCTGGTCCTATTAACATGGCTACTCAAGCTCTTGATGATTCTAGCCAGCTCACTCTCTCGTTTCGTGGCCAAGTTTATGTCTTTGATTCTGTGTCTCCTCAAAAGGTTCAAGCAGTGTTGTTGCTGTTGGGGGGATGTGAAGCGCCTTCGGGTTCACAAGGTGTGGAGGGTGTACAAGAATATCCAAAATGTAGTCAATCACAGCGAGCAGCCTCATTAGTTCGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATACATTGTGCGTCAAGATGTTGCTCTTAGGATGCAACGTAATAAGGGTCAATTTACTTCAGCTAAGAAACAAGATGGAAGTAATGGTTGGGGTGCAGACCAAGAGTCAGAGCAGGATGTTCAATCAGAAACCTCATGCACACATTGTGGCATAAGTTCAAAGTCCACCCCAATGATGCGGAAAGGGCCATCCGGTCCAAGGACACTTTGCAATGCTTGTGGACTCTTTTGGGCAAATAGGGGTACTTTAAGGGACATTTCCAAGAGAAACCAGGAACGCCCTCTTGCACCACCTGAGCAGGTTGGTGAGGCTAATAACAACTTGGACTGTGGGACTCCTATCCCTGCACATAACAGTCTTGTTACTTTCACTGATGATAATAAGCCAGCAGCTATGGTATCTGATCATTGA 843 0.4555 MYDPMNQIVAIDDNNDTSATIQPIDDNHHTHIIHYEDTNDDVNEDGSTDNRVYVSGPINMATQALDDSSQLTLSFRGQVYVFDSVSPQKVQAVLLLLGGCEAPSGSQGVEGVQEYPKCSQSQRAASLVRFRQKRKERCFDKKVRYIVRQDVALRMQRNKGQFTSAKKQDGSNGWGADQESEQDVQSETSCTHCGISSKSTPMMRKGPSGPRTLCNACGLFWANRGTLRDISKRNQERPLAPPEQVGEANNNLDCGTPIPAHNSLVTFTDDNKPAAMVSDH* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g1541 280 MobiDBLite consensus disorder prediction 160 193 - -
Lan3g1541 280 SMART tify_2 64 99 IPR010399 -
Lan3g1541 280 Pfam tify domain 68 98 IPR010399 -
Lan3g1541 280 Gene3D - 180 239 IPR013088 GO:0006355|GO:0008270
Lan3g1541 280 ProSiteProfiles CCT domain profile. 123 165 IPR010402 GO:0005515
Lan3g1541 280 ProSitePatterns GATA-type zinc finger domain. 190 217 IPR000679 GO:0006355|GO:0043565
Lan3g1541 280 ProSiteProfiles Tify domain profile. 64 99 IPR010399 -
Lan3g1541 280 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 235 - -
Lan3g1541 280 Pfam GATA zinc finger 190 226 IPR000679 GO:0006355|GO:0043565
Lan3g1541 280 CDD ZnF_GATA 189 237 IPR000679 GO:0006355|GO:0043565
Lan3g1541 280 SMART GATA_3 184 237 IPR000679 GO:0006355|GO:0043565
Lan3g1541 280 Pfam CCT motif 123 165 IPR010402 GO:0005515
Lan3g1541 280 PANTHER GATA TRANSCRIPTION FACTOR 28 24 258 IPR045280 GO:0006355
Lan3g1541 280 PANTHER GATA TRANSCRIPTION FACTOR 25 24 258 - -
Lan3g1541 280 ProSiteProfiles GATA-type zinc finger domain profile. 184 235 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g1541 Lan-Chr3 26875667 26881801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g1541 66 280 Tify Gene Family AT4G24470 54.167 4.86e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lan3g1541 CCT 2.7e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g1541 - - gmx:100784789 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan14g0704 14 13993708 13997720 Lan3g1541 3 26875667 26881801 LSH